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    LOC116510776 protocadherin alpha-1-like [ Thamnophis elegans (Western terrestrial garter snake) ]

    Gene ID: 116510776, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC116510776
    Gene description
    protocadherin alpha-1-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Thamnophis elegans
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Colubridae; Natricinae; Thamnophis
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    Genomic context

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    See LOC116510776 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    100 current rThaEle1.pri (GCF_009769535.1) 6 NC_045546.1 (69187979..69190474, complement)

    Chromosome 6 - NC_045546.1Genomic Context describing neighboring genes Neighboring gene protocadherin alpha-5-like Neighboring gene protocadherin alpha-3-like Neighboring gene protocadherin alpha-5-like Neighboring gene protocadherin alpha-3-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_045546.1 Chromosome 6 Reference rThaEle1.pri

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: protocadherin alpha-1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Thamnophis elegans Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference rThaEle1.pri

    Genomic

    1. NC_045546.1 Reference rThaEle1.pri

      Range
      69187979..69190474 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032220426.1 → XP_032076317.1  LOW QUALITY PROTEIN: protocadherin alpha-1-like

      Conserved Domains (4) summary
      cd11304
      Location:243 → 343
      Cadherin_repeat; Cadherin tandem repeat domain
      smart00112
      Location:154 → 237
      CA; Cadherin repeats
      pfam08266
      Location:31 → 109
      Cadherin_2; Cadherin-like
      pfam16492
      Location:683 → 724
      Cadherin_C_2; Cadherin cytoplasmic C-terminal
    Nucleotide Protein
    Heading Accession and Version