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    SYNGAP1 synaptic Ras GTPase activating protein 1 [ Strigops habroptila (Kakapo) ]

    Gene ID: 115603448, updated on 3-Aug-2024

    Summary

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    Gene symbol
    SYNGAP1
    Gene description
    synaptic Ras GTPase activating protein 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Strigops habroptila
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Psittaciformes; Psittacidae; Strigops
    Orthologs
    human mouse all
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    Genomic context

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    See SYNGAP1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    101 current bStrHab1.2.pri (GCF_004027225.2) Unplaced Scaffold NW_022651111.1 (28063..61793)
    100 previous assembly bStrHab1_v1.p (GCF_004027225.1) Unplaced Scaffold NW_022045635.1 (28063..59371)

    NW_022651111.1Genomic Context describing neighboring genes Neighboring gene death domain associated protein Neighboring gene PHD finger protein 1 Neighboring gene cutA divalent cation tolerance homolog Neighboring gene uncharacterized LOC115603450 Neighboring gene uncharacterized LOC115603453 Neighboring gene coiled-coil alpha-helical rod protein 1-like Neighboring gene zinc finger and BTB domain containing 9

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in negative regulation of Ras protein signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ras/Rap GTPase-activating protein SynGAP

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Strigops habroptila Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bStrHab1.2.pri

    Genomic

    1. NW_022651111.1 Reference bStrHab1.2.pri

      Range
      28063..61793
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032919734.1 → XP_032775625.1  ras/Rap GTPase-activating protein SynGAP isoform X3

      UniProtKB/TrEMBL
      A0A672UYK8
      Conserved Domains (4) summary
      cd04013
      Location:240 → 379
      C2_SynGAP_like; C2 domain present in Ras GTPase activating protein (GAP) family
      cd05136
      Location:370 → 693
      RasGAP_DAB2IP; Ras-GTPase Activating Domain of DAB2IP and similar proteins
      cd13375
      Location:110 → 298
      PH_SynGAP; Synaptic Ras-GTPase activating protein Pleckstrin homology (PH) domain
      pfam12004
      Location:683 → 1150
      DUF3498; Domain of unknown function (DUF3498)

    2. XM_030475347.2 → XP_030331207.1  ras/Rap GTPase-activating protein SynGAP isoform X15

      UniProtKB/TrEMBL
      A0A672UZG4
      Conserved Domains (4) summary
      cd04013
      Location:240 → 379
      C2_SynGAP_like; C2 domain present in Ras GTPase activating protein (GAP) family
      cd05136
      Location:370 → 693
      RasGAP_DAB2IP; Ras-GTPase Activating Domain of DAB2IP and similar proteins
      cd13375
      Location:110 → 298
      PH_SynGAP; Synaptic Ras-GTPase activating protein Pleckstrin homology (PH) domain
      pfam12004
      Location:683 → 1191
      DUF3498; Domain of unknown function (DUF3498)

    3. XM_030475348.2 → XP_030331208.1  ras/Rap GTPase-activating protein SynGAP isoform X11

      UniProtKB/TrEMBL
      A0A672UZG4
      Conserved Domains (4) summary
      cd04013
      Location:240 → 379
      C2_SynGAP_like; C2 domain present in Ras GTPase activating protein (GAP) family
      cd05136
      Location:370 → 693
      RasGAP_DAB2IP; Ras-GTPase Activating Domain of DAB2IP and similar proteins
      cd13375
      Location:110 → 298
      PH_SynGAP; Synaptic Ras-GTPase activating protein Pleckstrin homology (PH) domain
      pfam12004
      Location:683 → 1189
      DUF3498; Domain of unknown function (DUF3498)

    4. XM_032919732.1 → XP_032775623.1  ras/Rap GTPase-activating protein SynGAP isoform X1

      UniProtKB/TrEMBL
      A0A672UYK8
      Conserved Domains (4) summary
      cd04013
      Location:245 → 384
      C2_SynGAP_like; C2 domain present in Ras GTPase activating protein (GAP) family
      cd05136
      Location:375 → 698
      RasGAP_DAB2IP; Ras-GTPase Activating Domain of DAB2IP and similar proteins
      cd13375
      Location:110 → 303
      PH_SynGAP; Synaptic Ras-GTPase activating protein Pleckstrin homology (PH) domain
      pfam12004
      Location:688 → 1155
      DUF3498; Domain of unknown function (DUF3498)

    5. XM_032919733.1 → XP_032775624.1  ras/Rap GTPase-activating protein SynGAP isoform X2

      UniProtKB/TrEMBL
      A0A672UYK8
      Conserved Domains (4) summary
      cd04013
      Location:245 → 384
      C2_SynGAP_like; C2 domain present in Ras GTPase activating protein (GAP) family
      cd05136
      Location:375 → 698
      RasGAP_DAB2IP; Ras-GTPase Activating Domain of DAB2IP and similar proteins
      cd13375
      Location:110 → 303
      PH_SynGAP; Synaptic Ras-GTPase activating protein Pleckstrin homology (PH) domain
      pfam12004
      Location:688 → 1153
      DUF3498; Domain of unknown function (DUF3498)

    6. XM_032919735.1 → XP_032775626.1  ras/Rap GTPase-activating protein SynGAP isoform X4

      UniProtKB/TrEMBL
      A0A672UYK8
      Conserved Domains (4) summary
      cd04013
      Location:245 → 384
      C2_SynGAP_like; C2 domain present in Ras GTPase activating protein (GAP) family
      cd05136
      Location:375 → 698
      RasGAP_DAB2IP; Ras-GTPase Activating Domain of DAB2IP and similar proteins
      cd13375
      Location:110 → 303
      PH_SynGAP; Synaptic Ras-GTPase activating protein Pleckstrin homology (PH) domain
      pfam12004
      Location:688 → 1155
      DUF3498; Domain of unknown function (DUF3498)

    7. XM_032919739.1 → XP_032775630.1  ras/Rap GTPase-activating protein SynGAP isoform X8

      UniProtKB/TrEMBL
      A0A672UYK8
      Conserved Domains (4) summary
      cd04013
      Location:245 → 384
      C2_SynGAP_like; C2 domain present in Ras GTPase activating protein (GAP) family
      cd05136
      Location:375 → 698
      RasGAP_DAB2IP; Ras-GTPase Activating Domain of DAB2IP and similar proteins
      cd13375
      Location:110 → 303
      PH_SynGAP; Synaptic Ras-GTPase activating protein Pleckstrin homology (PH) domain
      pfam12004
      Location:688 → 1155
      DUF3498; Domain of unknown function (DUF3498)

    8. XM_030475343.2 → XP_030331203.1  ras/Rap GTPase-activating protein SynGAP isoform X9

      UniProtKB/TrEMBL
      A0A672UZG4
      Conserved Domains (4) summary
      cd04013
      Location:245 → 384
      C2_SynGAP_like; C2 domain present in Ras GTPase activating protein (GAP) family
      cd05136
      Location:375 → 698
      RasGAP_DAB2IP; Ras-GTPase Activating Domain of DAB2IP and similar proteins
      cd13375
      Location:110 → 303
      PH_SynGAP; Synaptic Ras-GTPase activating protein Pleckstrin homology (PH) domain
      pfam12004
      Location:688 → 1196
      DUF3498; Domain of unknown function (DUF3498)

    9. XM_030475345.2 → XP_030331205.1  ras/Rap GTPase-activating protein SynGAP isoform X12

      UniProtKB/TrEMBL
      A0A672UZG4
      Conserved Domains (4) summary
      cd04013
      Location:245 → 384
      C2_SynGAP_like; C2 domain present in Ras GTPase activating protein (GAP) family
      cd05136
      Location:375 → 698
      RasGAP_DAB2IP; Ras-GTPase Activating Domain of DAB2IP and similar proteins
      cd13375
      Location:110 → 303
      PH_SynGAP; Synaptic Ras-GTPase activating protein Pleckstrin homology (PH) domain
      pfam12004
      Location:688 → 1183
      DUF3498; Domain of unknown function (DUF3498)

    10. XM_030475344.2 → XP_030331204.1  ras/Rap GTPase-activating protein SynGAP isoform X10

      UniProtKB/TrEMBL
      A0A672UZG4
      Conserved Domains (4) summary
      cd04013
      Location:245 → 384
      C2_SynGAP_like; C2 domain present in Ras GTPase activating protein (GAP) family
      cd05136
      Location:375 → 698
      RasGAP_DAB2IP; Ras-GTPase Activating Domain of DAB2IP and similar proteins
      cd13375
      Location:110 → 303
      PH_SynGAP; Synaptic Ras-GTPase activating protein Pleckstrin homology (PH) domain
      pfam12004
      Location:688 → 1194
      DUF3498; Domain of unknown function (DUF3498)

    11. XM_030475346.1 → XP_030331206.1  ras/Rap GTPase-activating protein SynGAP isoform X14

      UniProtKB/TrEMBL
      A0A672UZG4
      Conserved Domains (4) summary
      cd04013
      Location:245 → 384
      C2_SynGAP_like; C2 domain present in Ras GTPase activating protein (GAP) family
      cd05136
      Location:375 → 698
      RasGAP_DAB2IP; Ras-GTPase Activating Domain of DAB2IP and similar proteins
      cd13375
      Location:110 → 303
      PH_SynGAP; Synaptic Ras-GTPase activating protein Pleckstrin homology (PH) domain
      pfam12004
      Location:688 → 1183
      DUF3498; Domain of unknown function (DUF3498)

    12. XM_032919736.1 → XP_032775627.1  ras/Rap GTPase-activating protein SynGAP isoform X5

      UniProtKB/TrEMBL
      A0A672UZG4
      Conserved Domains (4) summary
      cd04013
      Location:196 → 335
      C2_SynGAP_like; C2 domain present in Ras GTPase activating protein (GAP) family
      cd05136
      Location:326 → 649
      RasGAP_DAB2IP; Ras-GTPase Activating Domain of DAB2IP and similar proteins
      cd13375
      Location:61 → 254
      PH_SynGAP; Synaptic Ras-GTPase activating protein Pleckstrin homology (PH) domain
      pfam12004
      Location:639 → 1106
      DUF3498; Domain of unknown function (DUF3498)

    13. XM_032919737.1 → XP_032775628.1  ras/Rap GTPase-activating protein SynGAP isoform X6

      UniProtKB/TrEMBL
      A0A672UZG4
      Conserved Domains (4) summary
      cd04013
      Location:191 → 330
      C2_SynGAP_like; C2 domain present in Ras GTPase activating protein (GAP) family
      cd05136
      Location:321 → 644
      RasGAP_DAB2IP; Ras-GTPase Activating Domain of DAB2IP and similar proteins
      cd13375
      Location:61 → 249
      PH_SynGAP; Synaptic Ras-GTPase activating protein Pleckstrin homology (PH) domain
      pfam12004
      Location:634 → 1101
      DUF3498; Domain of unknown function (DUF3498)

    14. XM_032919738.1 → XP_032775629.1  ras/Rap GTPase-activating protein SynGAP isoform X7

      UniProtKB/TrEMBL
      A0A672UZG4
      Conserved Domains (4) summary
      cd04013
      Location:191 → 330
      C2_SynGAP_like; C2 domain present in Ras GTPase activating protein (GAP) family
      cd05136
      Location:321 → 644
      RasGAP_DAB2IP; Ras-GTPase Activating Domain of DAB2IP and similar proteins
      cd13375
      Location:61 → 249
      PH_SynGAP; Synaptic Ras-GTPase activating protein Pleckstrin homology (PH) domain
      pfam12004
      Location:634 → 1099
      DUF3498; Domain of unknown function (DUF3498)

    15. XM_032919740.1 → XP_032775631.1  ras/Rap GTPase-activating protein SynGAP isoform X13

      UniProtKB/TrEMBL
      A0A672UZG4
      Conserved Domains (4) summary
      cd04013
      Location:79 → 218
      C2_SynGAP_like; C2 domain present in Ras GTPase activating protein (GAP) family
      cd05136
      Location:209 → 532
      RasGAP_DAB2IP; Ras-GTPase Activating Domain of DAB2IP and similar proteins
      pfam12004
      Location:522 → 989
      DUF3498; Domain of unknown function (DUF3498)
      cl17171
      Location:1 → 137
      PH-like; Pleckstrin homology-like domain
    Nucleotide Protein
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