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    LOC116966731 receptor-type tyrosine-protein phosphatase H-like [ Amblyraja radiata (thorny skate) ]

    Gene ID: 116966731, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC116966731
    Gene description
    receptor-type tyrosine-protein phosphatase H-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Amblyraja radiata
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Batoidea; Rajiformes; Rajidae; Amblyraja
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    Genomic context

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    Location:
    chromosome: 38
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    100.20210331 current sAmbRad1.1.pri (GCF_010909765.2) 38 NC_045993.1 (4770569..4830805)

    Chromosome 38 - NC_045993.1Genomic Context describing neighboring genes Neighboring gene ferritin heavy chain-like Neighboring gene ferritin heavy chain B-like Neighboring gene pleckstrin homology-like domain family A member 2 Neighboring gene AKT1 substrate 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_045993.1 Chromosome 38 Reference sAmbRad1.1.pri

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cadherin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein tyrosine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in angiogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    receptor-type tyrosine-protein phosphatase H-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Amblyraja radiata Updated Annotation Release 100.20210331

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference sAmbRad1.1.pri

    Genomic

    1. NC_045993.1 Reference sAmbRad1.1.pri

      Range
      4770569..4830805
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_033013021.1 → XP_032868912.1  receptor-type tyrosine-protein phosphatase H-like isoform X13

      Conserved Domains (5) summary
      smart00060
      Location:591 → 667
      FN3; Fibronectin type 3 domain
      smart00194
      Location:1123 → 1381
      PTPc; Protein tyrosine phosphatase, catalytic domain
      cd00063
      Location:33 → 124
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:220 → 295
      fn3; Fibronectin type III domain
      cl21522
      Location:965 → 1041
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

    2. XM_033013025.1 → XP_032868916.1  receptor-type tyrosine-protein phosphatase H-like isoform X17

      Conserved Domains (5) summary
      smart00060
      Location:498 → 574
      FN3; Fibronectin type 3 domain
      smart00194
      Location:1030 → 1288
      PTPc; Protein tyrosine phosphatase, catalytic domain
      cd00063
      Location:33 → 124
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:220 → 295
      fn3; Fibronectin type III domain
      cl21522
      Location:872 → 948
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

    3. XM_033013023.1 → XP_032868914.1  receptor-type tyrosine-protein phosphatase H-like isoform X15

      Conserved Domains (5) summary
      smart00060
      Location:312 → 388
      FN3; Fibronectin type 3 domain
      smart00194
      Location:1123 → 1381
      PTPc; Protein tyrosine phosphatase, catalytic domain
      cd00063
      Location:126 → 217
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:871 → 949
      fn3; Fibronectin type III domain
      cl21522
      Location:965 → 1041
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

    4. XM_033013026.1 → XP_032868917.1  receptor-type tyrosine-protein phosphatase H-like isoform X18

      Conserved Domains (5) summary
      smart00060
      Location:498 → 574
      FN3; Fibronectin type 3 domain
      smart00194
      Location:1030 → 1288
      PTPc; Protein tyrosine phosphatase, catalytic domain
      cd00063
      Location:33 → 124
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:220 → 295
      fn3; Fibronectin type III domain
      cl21522
      Location:872 → 948
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

    5. XM_033013009.1 → XP_032868900.1  receptor-type tyrosine-protein phosphatase H-like isoform X2

      Conserved Domains (5) summary
      smart00060
      Location:405 → 481
      FN3; Fibronectin type 3 domain
      smart00194
      Location:1216 → 1474
      PTPc; Protein tyrosine phosphatase, catalytic domain
      cd00063
      Location:33 → 124
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:220 → 295
      fn3; Fibronectin type III domain
      cl21522
      Location:1058 → 1134
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

    6. XM_033013024.1 → XP_032868915.1  receptor-type tyrosine-protein phosphatase H-like isoform X16

      Conserved Domains (5) summary
      smart00060
      Location:219 → 295
      FN3; Fibronectin type 3 domain
      smart00194
      Location:1030 → 1288
      PTPc; Protein tyrosine phosphatase, catalytic domain
      cd00063
      Location:33 → 124
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:778 → 856
      fn3; Fibronectin type III domain
      cl21522
      Location:872 → 948
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

    7. XM_033013015.1 → XP_032868906.1  receptor-type tyrosine-protein phosphatase H-like isoform X8

      Conserved Domains (5) summary
      smart00060
      Location:405 → 481
      FN3; Fibronectin type 3 domain
      smart00194
      Location:1216 → 1474
      PTPc; Protein tyrosine phosphatase, catalytic domain
      cd00063
      Location:33 → 124
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:127 → 202
      fn3; Fibronectin type III domain
      cl21522
      Location:1058 → 1134
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

    8. XM_033013016.1 → XP_032868907.1  receptor-type tyrosine-protein phosphatase H-like isoform X9

      Conserved Domains (5) summary
      smart00060
      Location:498 → 574
      FN3; Fibronectin type 3 domain
      smart00194
      Location:1216 → 1474
      PTPc; Protein tyrosine phosphatase, catalytic domain
      cd00063
      Location:33 → 124
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:220 → 295
      fn3; Fibronectin type III domain
      cl21522
      Location:1058 → 1134
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

    9. XM_033013014.1 → XP_032868905.1  receptor-type tyrosine-protein phosphatase H-like isoform X7

      Conserved Domains (5) summary
      smart00060
      Location:684 → 760
      FN3; Fibronectin type 3 domain
      smart00194
      Location:1216 → 1474
      PTPc; Protein tyrosine phosphatase, catalytic domain
      cd00063
      Location:33 → 124
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:220 → 295
      fn3; Fibronectin type III domain
      cl21522
      Location:1058 → 1134
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

    10. XM_033013022.1 → XP_032868913.1  receptor-type tyrosine-protein phosphatase H-like isoform X14

      Conserved Domains (5) summary
      smart00060
      Location:591 → 667
      FN3; Fibronectin type 3 domain
      smart00194
      Location:1123 → 1381
      PTPc; Protein tyrosine phosphatase, catalytic domain
      cd00063
      Location:33 → 124
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:220 → 295
      fn3; Fibronectin type III domain
      cl21522
      Location:965 → 1041
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

    11. XM_033013018.1 → XP_032868909.1  receptor-type tyrosine-protein phosphatase H-like isoform X10

      Conserved Domains (5) summary
      smart00060
      Location:405 → 481
      FN3; Fibronectin type 3 domain
      smart00194
      Location:1216 → 1474
      PTPc; Protein tyrosine phosphatase, catalytic domain
      cd00063
      Location:33 → 124
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:964 → 1042
      fn3; Fibronectin type III domain
      cl21522
      Location:1058 → 1134
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

    12. XM_033013013.1 → XP_032868904.1  receptor-type tyrosine-protein phosphatase H-like isoform X6

      Conserved Domains (5) summary
      smart00060
      Location:498 → 574
      FN3; Fibronectin type 3 domain
      smart00194
      Location:1216 → 1474
      PTPc; Protein tyrosine phosphatase, catalytic domain
      cd00063
      Location:33 → 124
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:220 → 295
      fn3; Fibronectin type III domain
      cl21522
      Location:1058 → 1134
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

    13. XM_033013012.1 → XP_032868903.1  receptor-type tyrosine-protein phosphatase H-like isoform X5

      Conserved Domains (5) summary
      smart00060
      Location:498 → 574
      FN3; Fibronectin type 3 domain
      smart00194
      Location:1216 → 1474
      PTPc; Protein tyrosine phosphatase, catalytic domain
      cd00063
      Location:33 → 124
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:220 → 295
      fn3; Fibronectin type III domain
      cl21522
      Location:1058 → 1134
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

    14. XM_033013008.1 → XP_032868899.1  receptor-type tyrosine-protein phosphatase H-like isoform X1

      Conserved Domains (5) summary
      smart00060
      Location:498 → 574
      FN3; Fibronectin type 3 domain
      smart00194
      Location:1309 → 1567
      PTPc; Protein tyrosine phosphatase, catalytic domain
      cd00063
      Location:33 → 124
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:220 → 295
      fn3; Fibronectin type III domain
      cl21522
      Location:1151 → 1227
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

    15. XM_033013010.1 → XP_032868901.1  receptor-type tyrosine-protein phosphatase H-like isoform X3

      Conserved Domains (5) summary
      smart00060
      Location:405 → 481
      FN3; Fibronectin type 3 domain
      smart00194
      Location:1216 → 1474
      PTPc; Protein tyrosine phosphatase, catalytic domain
      cd00063
      Location:219 → 310
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:127 → 202
      fn3; Fibronectin type III domain
      cl21522
      Location:1058 → 1134
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

    16. XM_033013020.1 → XP_032868911.1  receptor-type tyrosine-protein phosphatase H-like isoform X12

      Conserved Domains (5) summary
      smart00060
      Location:312 → 388
      FN3; Fibronectin type 3 domain
      smart00194
      Location:1123 → 1381
      PTPc; Protein tyrosine phosphatase, catalytic domain
      cd00063
      Location:33 → 124
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:871 → 949
      fn3; Fibronectin type III domain
      cl21522
      Location:965 → 1041
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

    17. XM_033013011.1 → XP_032868902.1  receptor-type tyrosine-protein phosphatase H-like isoform X4

      Conserved Domains (5) summary
      smart00060
      Location:498 → 574
      FN3; Fibronectin type 3 domain
      smart00194
      Location:1216 → 1474
      PTPc; Protein tyrosine phosphatase, catalytic domain
      cd00063
      Location:33 → 124
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:220 → 295
      fn3; Fibronectin type III domain
      cl21522
      Location:1058 → 1134
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

    18. XM_033013019.1 → XP_032868910.1  receptor-type tyrosine-protein phosphatase H-like isoform X11

      Conserved Domains (5) summary
      smart00060
      Location:498 → 574
      FN3; Fibronectin type 3 domain
      smart00194
      Location:1123 → 1381
      PTPc; Protein tyrosine phosphatase, catalytic domain
      cd00063
      Location:33 → 124
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:220 → 295
      fn3; Fibronectin type III domain
      cl21522
      Location:965 → 1041
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    Nucleotide Protein
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