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    hnrnpu heterogeneous nuclear ribonucleoprotein U [ Amblyraja radiata (thorny skate) ]

    Gene ID: 116976210, updated on 18-Mar-2024

    Summary

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    Gene symbol
    hnrnpu
    Gene description
    heterogeneous nuclear ribonucleoprotein U
    See related
    EnsemblRapid:ENSARAG00005001626
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Amblyraja radiata
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Batoidea; Rajiformes; Rajidae; Amblyraja
    Orthologs
    human mouse all
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    Genomic context

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    See hnrnpu in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    100.20210331 current sAmbRad1.1.pri (GCF_010909765.2) 8 NC_045963.1 (52051854..52074917)

    Chromosome 8 - NC_045963.1Genomic Context describing neighboring genes Neighboring gene kinesin family member 26B Neighboring gene EF-hand calcium binding domain 2 Neighboring gene uncharacterized LOC116976211 Neighboring gene cytochrome c oxidase assembly protein COX20, mitochondrial

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_045963.1 Chromosome 8 Reference sAmbRad1.1.pri

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II C-terminal domain binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables TFIIH-class transcription factor complex binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables poly(C) RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables poly(G) binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pre-mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables promoter-specific chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ribonucleoprotein complex binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables snRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription corepressor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in CRD-mediated mRNA stabilization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in RNA localization to chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of telomere maintenance via telomerase IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of attachment of mitotic spindle microtubules to kinetochore IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of alternative mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of chromatin organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of mitotic spindle assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of CRD-mediated mRNA stability complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of catalytic step 2 spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in centrosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasmic ribonucleoprotein granule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in inactive sex chromosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in kinetochore IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in mitotic spindle microtubule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in mitotic spindle midzone IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nuclear chromosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nuclear matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nuclear speck IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of telomerase holoenzyme complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    heterogeneous nuclear ribonucleoprotein U

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Amblyraja radiata Updated Annotation Release 100.20210331

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference sAmbRad1.1.pri

    Genomic

    1. NC_045963.1 Reference sAmbRad1.1.pri

      Range
      52051854..52074917
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_033025892.1 → XP_032881783.1  heterogeneous nuclear ribonucleoprotein U

      Related
      ENSARAP00005002208.1, ENSARAT00005002397.1
      Conserved Domains (3) summary
      smart00513
      Location:6 → 40
      SAP; Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation
      cd12884
      Location:316 → 492
      SPRY_hnRNP; SPRY domain in heterogeneous nuclear ribonucleoprotein U-like (hnRNP) protein 1
      pfam13671
      Location:527 → 671
      AAA_33; AAA domain
    Nucleotide Protein
    Heading Accession and Version

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