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    SKOR2 SKI family transcriptional corepressor 2 [ Rhinolophus ferrumequinum (greater horseshoe bat) ]

    Gene ID: 117038751, updated on 30-Mar-2024

    Summary

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    Gene symbol
    SKOR2
    Gene description
    SKI family transcriptional corepressor 2
    See related
    EnsemblRapid:ENSRFEG00010013793
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rhinolophus ferrumequinum
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Rhinolophoidea; Rhinolophidae; Rhinolophinae; Rhinolophus
    Orthologs
    human mouse all
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    Genomic context

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    See SKOR2 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2023_02 current mRhiFer1_v1.p (GCF_004115265.2) 19 NC_046302.1 (38764831..38815281, complement)

    Chromosome 19 - NC_046302.1Genomic Context describing neighboring genes Neighboring gene haloacid dehalogenase like hydrolase domain containing 2 Neighboring gene immediate early response 3 interacting protein 1 Neighboring gene SMAD family member 2 Neighboring gene zinc finger and BTB domain containing 7C Neighboring gene developmental pluripotency-associated protein 2-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_046302.1 Chromosome 19 Reference mRhiFer1_v1.p

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables SMAD binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of BMP signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SKI family transcriptional corepressor 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_004115265.2-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mRhiFer1_v1.p

    Genomic

    1. NC_046302.1 Reference mRhiFer1_v1.p

      Range
      38764831..38815281 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_033135660.1 → XP_032991551.1  SKI family transcriptional corepressor 2

      UniProtKB/TrEMBL
      A0A671F4Z1, A0A7J7TR27
      Conserved Domains (2) summary
      cd21080
      Location:41 → 131
      DHD_Skor; Dachshund-homology domain found in SKI family transcriptional corepressors, Skor1, Skor2 and similar proteins
      cl07406
      Location:144 → 236
      c-SKI_SMAD_bind; c-SKI Smad4 binding domain

    2. XM_033135661.1 → XP_032991552.1  SKI family transcriptional corepressor 2

      UniProtKB/TrEMBL
      A0A671F4Z1, A0A7J7TR27
      Related
      ENSRFEP00010020619.1, ENSRFET00010022464.2
      Conserved Domains (2) summary
      cd21080
      Location:41 → 131
      DHD_Skor; Dachshund-homology domain found in SKI family transcriptional corepressors, Skor1, Skor2 and similar proteins
      cl07406
      Location:144 → 236
      c-SKI_SMAD_bind; c-SKI Smad4 binding domain
    Nucleotide Protein
    Heading Accession and Version

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