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    MMP16 matrix metallopeptidase 16 [ Mirounga leonina (Southern elephant seal) ]

    Gene ID: 118014992, updated on 20-Mar-2024

    Summary

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    Gene symbol
    MMP16
    Gene description
    matrix metallopeptidase 16
    Locus tag
    GH733_007972
    See related
    EnsemblRapid:ENSMLOG00005017300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Mirounga leonina
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Phocidae; Mirounga
    Orthologs
    human mouse all
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    Genomic context

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    See MMP16 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    100 current KU_Mleo_1.0 (GCF_011800145.1) Unplaced Scaffold NW_023270415.1 (36009442..36287981, complement)

    NW_023270415.1Genomic Context describing neighboring genes Neighboring gene U4 spliceosomal RNA Neighboring gene cyclic nucleotide binding domain containing 1 Neighboring gene tubulin alpha-1B chain-like Neighboring gene uncharacterized LOC118014993 Neighboring gene U4 spliceosomal RNA Neighboring gene uncharacterized LOC118014743 Neighboring gene non-histone chromosomal protein HMG-14-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_023270415 Unplaced Scaffold Reference KU_Mleo_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metalloendopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in collagen catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in extracellular matrix organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in skeletal system development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    matrix metalloproteinase-16

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Mirounga leonina Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference KU_Mleo_1.0 Primary Assembly

    Genomic

    1. NW_023270415.1 Reference KU_Mleo_1.0 Primary Assembly

      Range
      36009442..36287981 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035011485.1 → XP_034867376.1  matrix metalloproteinase-16

      Related
      ENSMLOP00005025099.1, ENSMLOT00005028267.1
      Conserved Domains (4) summary
      cd00094
      Location:340 → 532
      HX; Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of ...
      pfam00413
      Location:126 → 291
      Peptidase_M10; Matrixin
      pfam01471
      Location:46 → 96
      PG_binding_1; Putative peptidoglycan binding domain
      pfam11857
      Location:537 → 607
      DUF3377; Domain of unknown function (DUF3377)
    Nucleotide Protein
    Heading Accession and Version

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