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    LOC111869039 protein split ends [ Cryptotermes secundus ]

    Gene ID: 111869039, updated on 10-May-2024

    Summary

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    Gene symbol
    LOC111869039
    Gene description
    protein split ends
    Locus tag
    B7P43_G02023
    See related
    EnsemblRapid:LOC111869039
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cryptotermes secundus
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Polyneoptera; Dictyoptera; Blattodea; Blattoidea; Termitoidae; Kalotermitidae; Cryptotermitinae; Cryptotermes
    Orthologs
    fruit fly all
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    Genomic context

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    See LOC111869039 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    101 current Csec_1.0 (GCF_002891405.2) Unplaced Scaffold NW_019734964.1 (2057746..2344252)

    NW_019734964.1Genomic Context describing neighboring genes Neighboring gene Rap GTPase activating protein 1 Neighboring gene 5S ribosomal RNA Neighboring gene 5S ribosomal RNA Neighboring gene carboxypeptidase B Neighboring gene Inhibitor of growth family, member 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_019734964 Unplaced Scaffold Reference Csec_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein split ends

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cryptotermes secundus Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Csec_1.0

    Genomic

    1. NW_019734964.1 Reference Csec_1.0

      Range
      2057746..2344252
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_033753266.1 → XP_033609157.1  protein split ends isoform X1

      UniProtKB/TrEMBL
      A0A2J7Q932
      Related
      XP_033609157.1, XM_033753266.1
      Conserved Domains (9) summary
      PTZ00121
      Location:1740 → 2647
      PTZ00121; MAEBL; Provisional
      PTZ00449
      Location:3115 → 3429
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      PHA03247
      Location:4070 → 4580
      PHA03247; large tegument protein UL36; Provisional
      pfam05109
      Location:1365 → 1635
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      pfam07744
      Location:4807 → 4971
      SPOC; SPOC domain
      cd12349
      Location:304 → 376
      RRM2_SHARP; RNA recognition motif 2 (RRM2) found in SMART/HDAC1-associated repressor protein (SHARP) and similar proteins
      cd12350
      Location:403 → 476
      RRM3_SHARP; RNA recognition motif 3 (RRM3) found in SMART/HDAC1-associated repressor protein (SHARP) and similar proteins
      NF033609
      Location:3419 → 3792
      MSCRAMM_ClfA; MSCRAMM family adhesin clumping factor ClfA
      cl17169
      Location:477 → 553
      RRM_SF; RNA recognition motif (RRM) superfamily

    2. XM_033753267.1 → XP_033609158.1  protein split ends isoform X2

      UniProtKB/TrEMBL
      A0A2J7Q932
      Related
      XP_033609158.1, XM_033753267.1
      Conserved Domains (9) summary
      PTZ00121
      Location:1740 → 2647
      PTZ00121; MAEBL; Provisional
      PTZ00449
      Location:3115 → 3429
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      PHA03247
      Location:4070 → 4610
      PHA03247; large tegument protein UL36; Provisional
      pfam05109
      Location:1365 → 1635
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      pfam07744
      Location:4806 → 4970
      SPOC; SPOC domain
      cd12349
      Location:304 → 376
      RRM2_SHARP; RNA recognition motif 2 (RRM2) found in SMART/HDAC1-associated repressor protein (SHARP) and similar proteins
      cd12350
      Location:403 → 476
      RRM3_SHARP; RNA recognition motif 3 (RRM3) found in SMART/HDAC1-associated repressor protein (SHARP) and similar proteins
      NF033609
      Location:3419 → 3792
      MSCRAMM_ClfA; MSCRAMM family adhesin clumping factor ClfA
      cl17169
      Location:477 → 553
      RRM_SF; RNA recognition motif (RRM) superfamily

    3. XM_033753269.1 → XP_033609160.1  protein split ends isoform X5

      UniProtKB/TrEMBL
      A0A2J7Q937
      Related
      XP_033609160.1, XM_033753269.1
      Conserved Domains (9) summary
      PTZ00121
      Location:1740 → 2647
      PTZ00121; MAEBL; Provisional
      PTZ00449
      Location:3115 → 3429
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      PHA03247
      Location:4070 → 4580
      PHA03247; large tegument protein UL36; Provisional
      pfam05109
      Location:1365 → 1635
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      pfam07744
      Location:4774 → 4938
      SPOC; SPOC domain
      cd12349
      Location:304 → 376
      RRM2_SHARP; RNA recognition motif 2 (RRM2) found in SMART/HDAC1-associated repressor protein (SHARP) and similar proteins
      cd12350
      Location:403 → 476
      RRM3_SHARP; RNA recognition motif 3 (RRM3) found in SMART/HDAC1-associated repressor protein (SHARP) and similar proteins
      NF033609
      Location:3419 → 3792
      MSCRAMM_ClfA; MSCRAMM family adhesin clumping factor ClfA
      cl17169
      Location:477 → 553
      RRM_SF; RNA recognition motif (RRM) superfamily

    4. XM_023860225.2 → XP_023715993.1  protein split ends isoform X3

      UniProtKB/TrEMBL
      A0A2J7Q932
      Related
      XP_023715993.1, XM_023860225.2

    5. XM_023860226.2 → XP_023715994.1  protein split ends isoform X4

      UniProtKB/TrEMBL
      A0A2J7Q932
      Related
      XP_023715994.1, XM_023860226.2
    Nucleotide Protein
    Heading Accession and Version

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