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    SPAR_L01660 Cft2 [ Saccharomyces paradoxus ]

    Gene ID: 54632256, updated on 17-May-2024

    Summary

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    Gene symbol
    SPAR_L01660
    Gene description
    Cft2
    Locus tag
    SPAR_L01660
    See related
    FungiDB:SPAR_L01660; VEuPathDB:SPAR_L01660
    Gene type
    protein coding
    RNA name
    Cft2
    RefSeq status
    PROVISIONAL
    Organism
    Saccharomyces paradoxus (strain: CBS432, type-material: culture from neotype of Saccharomyces paradoxus)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
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    Genomic context

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    See SPAR_L01660 in Genome Data Viewer
    Location:
    chromosome: XII
    Exon count:
    1
    Sequence:
    Chromosome: XII; NC_047498.1 (369009..371600)

    Chromosome XII - NC_047498.1Genomic Context describing neighboring genes Neighboring gene tRNA-Arg Neighboring gene Avl9 Neighboring gene Msl5 Neighboring gene Clf1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_047498.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Contrasting evolutionary genome dynamics between domesticated and wild yeasts. Yue JX, et al. Nat Genet, 2017 Jun. PMID 28416820, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA 3'-end processing by stem-loop binding and cleavage IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of mRNA cleavage and polyadenylation specificity factor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Cft2
    XP_033767887.1
    • Subunit of the mRNA cleavage and polyadenlylation factor (CPF)
      similar to YLR115W

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_047498.1 Reference assembly

      Range
      369009..371600
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_033911996.1 → XP_033767887.1  Cft2 [Saccharomyces paradoxus]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8B8UVU2
      Conserved Domains (3) summary
      smart01027
      Location:254 → 372
      Beta-Casp; Beta-Casp domain
      pfam13299
      Location:736 → 860
      CPSF100_C; Cleavage and polyadenylation factor 2 C-terminal
      pfam16661
      Location:19 → 211
      Lactamase_B_6; Metallo-beta-lactamase superfamily domain
    Nucleotide Protein
    Heading Accession and Version

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