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    mapk13 mitogen-activated protein kinase 13 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100144715, updated on 4-Nov-2024

    Summary

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    Official Symbol
    mapk13provided by Xenbase
    Official Full Name
    mitogen-activated protein kinase 13provided by Xenbase
    Primary source
    Xenbase:XB-GENE-490713
    See related
    Ensembl:ENSXETG00000031922 AllianceGenome:Xenbase:XB-GENE-490713
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    sapk4; prkm13; p38delta
    Summary
    Predicted to enable ATP binding activity and MAP kinase activity. Predicted to act upstream of or within MAPK cascade and protein phosphorylation. [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See mapk13 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (64887578..64970488)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (78211631..78294736)

    Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene neurofascin Neighboring gene contactin 2 Neighboring gene bromodomain and PHD finger containing 3 Neighboring gene TBC1 domain family member 22B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables MAP kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within MAPK cascade IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    mitogen-activated protein kinase 13
    NP_001116942.1
    XP_017946560.1
    XP_031751532.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001123470.1 → NP_001116942.1  mitogen-activated protein kinase 13

      See identical proteins and their annotated locations for NP_001116942.1

      Status: PROVISIONAL

      Source sequence(s)
      BC161774
      UniProtKB/TrEMBL
      A0A6I8T006, B1WBJ0, F6R1E3, F6ZD07
      Related
      ENSXETP00000099807.1, ENSXETT00000075396.2
      Conserved Domains (1) summary
      cd07879
      Location:9 → 350
      STKc_p38delta; Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase (also called MAPK13)

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      64887578..64970488
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018091071.2 → XP_017946560.1  mitogen-activated protein kinase 13 isoform X2

      UniProtKB/TrEMBL
      A0A6I8T006, A0A8J0T0M6

    2. XM_031895672.1 → XP_031751532.1  mitogen-activated protein kinase 13 isoform X1

      UniProtKB/TrEMBL
      A0A6I8T006, A0A8J1J105
      Conserved Domains (1) summary
      cd07879
      Location:9 → 352
      STKc_p38delta; Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase (also called MAPK13)
    Nucleotide Protein Strain
    Heading Accession and Version

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