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    TRIM28 tripartite motif containing 28 [ Pan paniscus (pygmy chimpanzee) ]

    Gene ID: 100973173, updated on 8-Mar-2024

    Summary

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    Gene symbol
    TRIM28
    Gene description
    tripartite motif containing 28
    See related
    Ensembl:ENSPPAG00000001724
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pan paniscus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs
    human mouse all
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    Genomic context

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    See TRIM28 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 20 NC_073269.2 (64829636..64836289)
    RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 19 NC_073268.1 (66612502..66619155)

    Chromosome 20 - NC_073269.2Genomic Context describing neighboring genes Neighboring gene solute carrier family 27 member 5 Neighboring gene uncharacterized LOC134729651 Neighboring gene zinc finger and BTB domain containing 45 Neighboring gene uncharacterized LOC106634151 Neighboring gene charged multivesicular body protein 2A Neighboring gene ubiquitin conjugating enzyme E2 M

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription corepressor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription intermediary factor 1-beta

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Genomic

    1. NC_073269.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

      Range
      64829636..64836289
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_034944768.3 → XP_034800659.1  transcription intermediary factor 1-beta

      UniProtKB/TrEMBL
      A0A2R8Z6Q5
      Conserved Domains (7) summary
      cd05502
      Location:696 → 802
      Bromo_tif1_like; Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or ...
      smart00502
      Location:252 → 378
      BBC; B-Box C-terminal domain
      cd15623
      Location:627 → 669
      PHD_TIF1beta; PHD finger found in transcription intermediary factor 1-beta (TIF1-beta)
      cd16765
      Location:62 → 124
      RING-HC_TIF1beta; RING finger, HC subclass, found in transcription inknown asiary factor 1-beta (TIF1-beta)
      cd19829
      Location:206 → 249
      Bbox2_TIF1b_C-VI; B-box-type 2 zinc finger found in transcription intermediary factor 1-beta (TIF1-beta)
      cd19846
      Location:148 → 199
      Bbox1_TIF1b_C-VI; B-box-type 1 zinc finger found in transcription intermediary factor 1-beta (TIF1-beta)
      NF033761
      Location:526 → 626
      gliding_GltJ; adventurous gliding motility protein GltJ
    Nucleotide Protein
    Heading Accession and Version

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