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    LOC118310740 neuropilin-1a-like [ Scophthalmus maximus (turbot) ]

    Gene ID: 118310740, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC118310740
    Gene description
    neuropilin-1a-like
    See related
    EnsemblRapid:ENSSMAG00025022491
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Scophthalmus maximus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Scophthalmidae; Scophthalmus
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    Genomic context

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    See LOC118310740 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    101 current ASM2237912v1 (GCF_022379125.1) 5 NC_061519.1 (25323357..25393378, complement)
    100 previous assembly ASM1334776v1 (GCF_013347765.1) 7 NC_049694.1 (2820073..2889486)

    Chromosome 5 - NC_061519.1Genomic Context describing neighboring genes Neighboring gene enhancer of polycomb homolog 1 Neighboring gene uncharacterized LOC118311253 Neighboring gene integrin beta-1 Neighboring gene tripartite motif-containing protein 16-like Neighboring gene tripartite motif-containing protein 16-like Neighboring gene partitioning defective 3 homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables semaphorin receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables vascular endothelial growth factor receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in angiogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vascular endothelial growth factor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    neuropilin-1a-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Scophthalmus maximus Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM2237912v1 Primary Assembly

    Genomic

    1. NC_061519.1 Reference ASM2237912v1 Primary Assembly

      Range
      25323357..25393378 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_047331951.1 → XP_047187907.1  neuropilin-1a-like isoform X2

      Related
      ENSSMAP00025069629.1, ENSSMAT00025075225.1

    2. XM_035633966.2 → XP_035489859.1  neuropilin-1a-like isoform X1

      UniProtKB/TrEMBL
      A0A8D3A2A4
      Conserved Domains (4) summary
      cd00041
      Location:34 → 147
      CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
      cd00057
      Location:289 → 435
      FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.
      pfam00629
      Location:681 → 852
      MAM; MAM domain, meprin/A5/mu
      pfam11980
      Location:878 → 959
      DUF3481; C-terminal domain of neuropilin glycoprotein

    3. XM_047331953.1 → XP_047187909.1  neuropilin-1a-like isoform X4

    4. XM_047331952.1 → XP_047187908.1  neuropilin-1a-like isoform X3

    Nucleotide Protein Strain
    Heading Accession and Version

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