U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    LOC118409603 fibrillin-2-like [ Branchiostoma floridae (Florida lancelet) ]

    Gene ID: 118409603, updated on 14-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC118409603
    Gene description
    fibrillin-2-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Branchiostoma floridae
    Lineage
    Eukaryota; Metazoa; Chordata; Cephalochordata; Leptocardii; Amphioxiformes; Branchiostomatidae; Branchiostoma
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC118409603 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    69
    Annotation release Status Assembly Chr Location
    100 current Bfl_VNyyK (GCF_000003815.2) 1 NC_049979.1 (14934435..14985602)

    Chromosome 1 - NC_049979.1Genomic Context describing neighboring genes Neighboring gene anaphase-promoting complex subunit 1-like Neighboring gene uncharacterized LOC118423202 Neighboring gene uncharacterized LOC118411491 Neighboring gene BTB/POZ domain-containing protein 9-like Neighboring gene RNA transcription, translation and transport factor protein-like Neighboring gene lysosomal-trafficking regulator-like Neighboring gene zinc finger protein 525-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_049979.1 Chromosome 1 Reference Bfl_VNyyK Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Conserved Noncoding Elements in the Most Distant Genera of Cephalochordates: The Goldilocks Principle. Yue JX, et al. Genome Biol Evol, 2016 Aug 25. PMID 27412606, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell-matrix adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    fibrillin-2-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Branchiostoma floridae Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Bfl_VNyyK Primary Assembly

    Genomic

    1. NC_049979.1 Reference Bfl_VNyyK Primary Assembly

      Range
      14934435..14985602
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035810780.1 → XP_035666673.1  fibrillin-2-like

      UniProtKB/TrEMBL
      A0A9J7KME7, C3Y0L6
      Conserved Domains (8) summary
      smart00135
      Location:3058 → 3100
      LY; Low-density lipoprotein-receptor YWTD domain
      smart00179
      Location:2933 → 2972
      EGF_CA; Calcium-binding EGF-like domain
      smart00539
      Location:96 → 249
      NIDO; Extracellular domain of unknown function in nidogen (entactin) and hypothetical proteins
      cd05819
      Location:3068 → 3103
      NHL; NHL repeat [structural motif]
      cl18310
      Location:3034 → 3247
      NHL; NHL repeat unit of beta-propeller proteins
      pfam07474
      Location:369 → 548
      G2F; G2F domain
      pfam12947
      Location:626 → 660
      EGF_3; EGF domain
      cl21504
      Location:1042 → 1070
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases