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    VVY_gp1 polyprotein [ Verbena virus Y ]

    Gene ID: 10987422, updated on 16-Aug-2018

    Summary

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    Gene symbol
    VVY_gp1
    Gene description
    polyprotein
    Locus tag
    VVY_gp1
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Verbena virus Y (isolate: Michigan, nat-host: Verbena sp. cv. 'Taylor Town')
    Lineage
    Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae; Potyvirus; unclassified Potyvirus
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    Genomic context

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    Sequence:
    NC_010735.1 (135..9452)

    NC_010735.1Genomic Context describing neighboring genes Neighboring gene PIPO

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_010735.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    polyprotein
    Names
    P1
    HC-Pro
    P3
    6K1
    CI
    6K2
    Vpg
    NIa
    NIb
    CP

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_010735.1 Reference assembly

      Range
      135..9452
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_001931955.1 polyprotein [Verbena virus Y]

      See identical proteins and their annotated locations for YP_001931955.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      B2D0J2
      Conserved Domains (10) summary
      smart00487
      Location:1255 → 1406
      DEXDc; DEAD-like helicases superfamily
      cd00046
      Location:1262 → 1389
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam01577
      Location:43 → 284
      Peptidase_S30; Potyvirus P1 protease
      pfam00271
      Location:1430 → 1542
      Helicase_C; Helicase conserved C-terminal domain
      pfam00680
      Location:2321 → 2788
      RdRP_1; RNA dependent RNA polymerase
      pfam00767
      Location:2871 → 3103
      Poty_coat; Potyvirus coat protein
      pfam00851
      Location:308 → 741
      Peptidase_C6; Helper component proteinase
      pfam00863
      Location:2056 → 2289
      Peptidase_C4; Peptidase family C4
      pfam08440
      Location:1568 → 1840
      Poty_PP; Potyviridae polyprotein
      pfam13608
      Location:797 → 1234
      Potyvirid-P3; Protein P3 of Potyviral polyprotein

    2. YP_001931974.1 P1

      Conserved Domains (1) summary
      pfam01577
      Location:43 → 284
      Peptidase_S30; Potyvirus P1 protease

    3. YP_001936179.1 HC-Pro

      Conserved Domains (1) summary
      pfam00851
      Location:23 → 456
      Peptidase_C6; Helper component proteinase

    4. YP_001936180.1 P3

      Conserved Domains (1) summary
      pfam13608
      Location:56 → 390
      Potyvirid-P3; Protein P3 of Potyviral polyprotein

    5. YP_001936181.1 6K1

      Conserved Domains (1) summary
      pfam13608
      Location:1 → 52
      Potyvirid-P3; Protein P3 of Potyviral polyprotein

    6. YP_001936182.1 CI

      Conserved Domains (5) summary
      smart00487
      Location:72 → 223
      DEXDc; DEAD-like helicases superfamily
      cd00046
      Location:79 → 206
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam00271
      Location:247 → 359
      Helicase_C; Helicase conserved C-terminal domain
      pfam08440
      Location:385 → 634
      Poty_PP; Potyviridae polyprotein
      pfam13608
      Location:1 → 51
      Potyvirid-P3; Protein P3 of Potyviral polyprotein

    7. YP_001936183.1 6K2

    8. YP_001936184.1 Vpg

    9. YP_001936185.1 NIa

      Conserved Domains (1) summary
      pfam00863
      Location:1 → 232
      Peptidase_C4; Peptidase family C4

    10. YP_001936186.1 NIb

      Conserved Domains (1) summary
      pfam00680
      Location:18 → 485
      RdRP_1; RNA dependent RNA polymerase

    11. YP_001936187.1 CP

      Conserved Domains (1) summary
      pfam00767
      Location:49 → 281
      Poty_coat; Potyvirus coat protein
    Nucleotide Protein
    Heading Accession and Version

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