U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    ToMarV_RNA1gp1 polyprotein [ Tomato marchitez virus ]

    Gene ID: 6391316, updated on 18-Aug-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    ToMarV_RNA1gp1
    Gene description
    polyprotein
    Locus tag
    ToMarV_RNA1gp1
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Tomato marchitez virus (isolate: PRI-TMarV0601)
    Lineage
    Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; Secoviridae; Torradovirus
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    segment: RNA 1
    Sequence:
    NC_010987.1 (141..6596)

    NC_010987.1Genomic Context describing neighboring genes

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_010987.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Tomato marchitez virus, a new plant picorna-like virus from tomato related to tomato torrado virus. Verbeek M, et al. Arch Virol, 2008. PMID 17965923

    GeneRIFs: Gene References Into Functions

    General protein information

    Go to the top of the page Help
    Preferred Names
    polyprotein
    Names
    RNA-dependent RNA polymerase
    helicase

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_010987.1 Reference assembly

      Range
      141..6596
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_001976147.1 polyprotein [Tomato marchitez virus]

      See identical proteins and their annotated locations for YP_001976147.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A140G937, A9UC61
      Conserved Domains (2) summary
      pfam00910
      Location:388 → 495
      RNA_helicase; RNA helicase
      cl02808
      Location:1136 → 1641
      RT_like; RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, ...

    2. YP_001976153.1 RNA-dependent RNA polymerase

      Conserved Domains (1) summary
      cd01699
      Location:1 → 249
      RNA_dep_RNAP; RNA_dep_RNAP: RNA-dependent RNA polymerase (RdRp) is an essential protein encoded in the genomes of all RNA containing viruses with no DNA stage. RdRp catalyzes synthesis of the RNA strand complementary to a given RNA template. RdRps of many viruses are ...

    3. YP_001976154.1 helicase

      Conserved Domains (1) summary
      pfam00910
      Location:1 → 98
      RNA_helicase; RNA helicase
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.