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    INSYN1 inhibitory synaptic factor 1 [ Sus scrofa (pig) ]

    Gene ID: 100156505, updated on 17-Aug-2024

    Summary

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    Official Symbol
    INSYN1provided by VGNC
    Official Full Name
    inhibitory synaptic factor 1provided by VGNC
    Primary source
    VGNC:VGNC:89155
    See related
    Ensembl:ENSSSCG00000001916
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Also known as
    C7H15orf59
    Expression
    Broad expression in heart (RPKM 6.1), psoas major muscle (RPKM 1.7) and 5 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See INSYN1 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 7 NC_010449.5 (59663878..59680847)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 7 NC_010449.4 (64341240..64357170)

    Chromosome 7 - NC_010449.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110261566 Neighboring gene TBC1 domain family member 21 Neighboring gene uncharacterized LOC102167130 Neighboring gene CD276 molecule Neighboring gene neuroplastin Neighboring gene REC114 meiotic recombination protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in inhibitory postsynaptic potential IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in postsynaptic density IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    UPF0583 protein C15orf59 homolog
    Names
    chromosome 7 C15orf59 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010449.5 Reference Sscrofa11.1 Primary Assembly

      Range
      59663878..59680847
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001928612.5 → XP_001928647.1  UPF0583 protein C15orf59 homolog

      UniProtKB/TrEMBL
      A0A8D1KRZ0, A0A8D1WRE4, F1SIC7
      Related
      ENSSSCP00000002095.2, ENSSSCT00000002145.5
      Conserved Domains (2) summary
      pfam15252
      Location:52 → 282
      DUF4589; Domain of unknown function (DUF4589)
      cl00846
      Location:20 → 60
      CsoR-like_DUF156; Transcriptional regulators CsoR (copper-sensitive operon repressor), RcnR, and FrmR, and related domains; this domain superfamily was previously known as DUF156
    Nucleotide Protein
    Heading Accession and Version

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