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    CSF2RA colony stimulating factor 2 receptor subunit alpha [ Canis lupus familiaris (dog) ]

    Gene ID: 609266, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CSF2RAprovided by VGNC
    Official Full Name
    colony stimulating factor 2 receptor subunit alphaprovided by VGNC
    Primary source
    VGNC:VGNC:39655
    See related
    Ensembl:ENSCAFG00845021143
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human all
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    Genomic context

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    See CSF2RA in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) X NC_051843.1 (742740..766122)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) X NC_006621.4 (772774..796202)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) X NC_049260.1 (748192..771608)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) X NC_049299.1 (734899..758240)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) X NC_049780.1 (751242..774663)

    Chromosome X - NC_051843.1Genomic Context describing neighboring genes Neighboring gene SHOX homeobox Neighboring gene cytokine receptor like factor 2 Neighboring gene granulocyte-macrophage colony-stimulating factor receptor subunit alpha-like Neighboring gene interleukin 3 receptor subunit alpha

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cytokine receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytokine-mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in external side of plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    granulocyte-macrophage colony-stimulating factor receptor subunit alpha
    Names
    colony stimulating factor 2 receptor alpha subunit

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051843.1 Reference ROS_Cfam_1.0

      Range
      742740..766122
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038449261.1 → XP_038305189.1  granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform X2

      UniProtKB/TrEMBL
      A0A8I3P791
      Related
      ENSCAFP00845029368.1, ENSCAFT00845037484.1
      Conserved Domains (2) summary
      pfam18611
      Location:31 → 108
      IL3Ra_N; IL-3 receptor alpha chain N-terminal domain
      cl21522
      Location:119 → 211
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

    2. XM_038449260.1 → XP_038305188.1  granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform X1

      UniProtKB/TrEMBL
      A0A8I3PBB4
      Related
      ENSCAFP00845029255.1, ENSCAFT00845037345.1
      Conserved Domains (2) summary
      pfam18611
      Location:65 → 142
      IL3Ra_N; IL-3 receptor alpha chain N-terminal domain
      cl21522
      Location:153 → 245
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

    3. XM_038449262.1 → XP_038305190.1  granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform X3

      UniProtKB/TrEMBL
      A0A8I3S2B1
      Related
      ENSCAFP00845029458.1, ENSCAFT00845037599.1
      Conserved Domains (2) summary
      pfam18611
      Location:65 → 142
      IL3Ra_N; IL-3 receptor alpha chain N-terminal domain
      cl21522
      Location:153 → 245
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

    RNA

    1. XR_005309177.1 RNA Sequence

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049299.1 Alternate UMICH_Zoey_3.1

      Range
      734899..758240
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038522695.1 → XP_038378623.1  granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform X2

    2. XM_038522694.1 → XP_038378622.1  granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform X1

    3. XM_038522696.1 → XP_038378624.1  granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform X3

    RNA

    1. XR_005351936.1 RNA Sequence

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049780.1 Alternate UNSW_CanFamBas_1.0

      Range
      751242..774663
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038651207.1 → XP_038507135.1  granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform X2

      Conserved Domains (2) summary
      pfam18611
      Location:31 → 108
      IL3Ra_N; IL-3 receptor alpha chain N-terminal domain
      cl21522
      Location:119 → 211
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

    2. XM_038651206.1 → XP_038507134.1  granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform X1

      Conserved Domains (2) summary
      pfam18611
      Location:65 → 142
      IL3Ra_N; IL-3 receptor alpha chain N-terminal domain
      cl21522
      Location:153 → 245
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

    3. XM_038651208.1 → XP_038507136.1  granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform X3

      Conserved Domains (2) summary
      pfam18611
      Location:65 → 142
      IL3Ra_N; IL-3 receptor alpha chain N-terminal domain
      cl21522
      Location:153 → 245
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

    RNA

    1. XR_005419848.1 RNA Sequence

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049260.1 Alternate UU_Cfam_GSD_1.0

      Range
      748192..771608
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038586706.1 → XP_038442634.1  granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform X2

      UniProtKB/TrEMBL
      A0A8I3P791
      Conserved Domains (2) summary
      pfam18611
      Location:31 → 108
      IL3Ra_N; IL-3 receptor alpha chain N-terminal domain
      cl21522
      Location:119 → 211
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

    2. XM_038586705.1 → XP_038442633.1  granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform X1

      UniProtKB/TrEMBL
      A0A8I3PBB4
      Conserved Domains (2) summary
      pfam18611
      Location:65 → 142
      IL3Ra_N; IL-3 receptor alpha chain N-terminal domain
      cl21522
      Location:153 → 245
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

    3. XM_038586707.1 → XP_038442635.1  granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform X3

      UniProtKB/TrEMBL
      A0A8I3S2B1
      Conserved Domains (2) summary
      pfam18611
      Location:65 → 142
      IL3Ra_N; IL-3 receptor alpha chain N-terminal domain
      cl21522
      Location:153 → 245
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

    RNA

    1. XR_005386048.1 RNA Sequence

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006621.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      772774..796202
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_022416018.2 → XP_022271726.2  granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform X2

      UniProtKB/TrEMBL
      A0A8I3P791
      Conserved Domains (2) summary
      pfam18611
      Location:31 → 108
      IL3Ra_N; IL-3 receptor alpha chain N-terminal domain
      cl21522
      Location:119 → 211
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

    2. XM_005641054.4 → XP_005641111.3  granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform X1

      UniProtKB/TrEMBL
      A0A8I3PBB4
      Conserved Domains (2) summary
      pfam18611
      Location:65 → 142
      IL3Ra_N; IL-3 receptor alpha chain N-terminal domain
      cl21522
      Location:153 → 245
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

    3. XM_005641059.4 → XP_005641116.3  granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform X3

      UniProtKB/TrEMBL
      A0A8I3S2B1
      Conserved Domains (2) summary
      pfam18611
      Location:65 → 142
      IL3Ra_N; IL-3 receptor alpha chain N-terminal domain
      cl21522
      Location:153 → 245
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

    RNA

    1. XR_002624325.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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