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    CLMN calmin [ Canis lupus familiaris (dog) ]

    Gene ID: 480427, updated on 5-Mar-2024

    Summary

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    Official Symbol
    CLMNprovided by VGNC
    Official Full Name
    calminprovided by VGNC
    Primary source
    VGNC:VGNC:39350
    See related
    Ensembl:ENSCAFG00845003303
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See CLMN in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 8 NC_051812.1 (64345543..64460888, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 8 NC_006590.4 (63665167..63770741, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 8 NC_049229.1 (64404347..64519672, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 8 NC_049268.1 (64020545..64135735, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 8 NC_049749.1 (64079395..64194759, complement)

    Chromosome 8 - NC_051812.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106559135 Neighboring gene dicer 1, ribonuclease III Neighboring gene uncharacterized LOC106559136 Neighboring gene spectrin repeat containing nuclear envelope family member 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin filament binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of cell population proliferation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nuclear migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of meiotic nuclear membrane microtubule tethering complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nuclear outer membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: calmin; calmin
    Names
    calmin (calponin-like, transmembrane)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051812.1 Reference ROS_Cfam_1.0

      Range
      64345543..64460888 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038674558.1 → XP_038530486.1  calmin isoform X3

      UniProtKB/TrEMBL
      A0A8I3MNH5
      Conserved Domains (2) summary
      cd21245
      Location:155 → 260
      CH_CLMN_rpt2; second calponin homology (CH) domain found in calmin and similar proteins
      cl00030
      Location:29 → 110
      CH_SF; calponin homology (CH) domain superfamily

    2. XM_038674557.1 → XP_038530485.1  calmin isoform X2

      UniProtKB/TrEMBL
      A0A8C0Q922, A0A8I3MV15
      Related
      ENSCAFP00845004646.1, ENSCAFT00845005850.1
      Conserved Domains (2) summary
      cd21191
      Location:29 → 142
      CH_CLMN_rpt1; first calponin homology (CH) domain found in calmin and similar proteins
      cd21245
      Location:186 → 291
      CH_CLMN_rpt2; second calponin homology (CH) domain found in calmin and similar proteins

    3. XM_038674556.1 → XP_038530484.1  calmin isoform X1

      UniProtKB/TrEMBL
      A0A8C0Q922
      Conserved Domains (2) summary
      cd21191
      Location:29 → 142
      CH_CLMN_rpt1; first calponin homology (CH) domain found in calmin and similar proteins
      cd21245
      Location:186 → 291
      CH_CLMN_rpt2; second calponin homology (CH) domain found in calmin and similar proteins

    4. XM_038674559.1 → XP_038530487.1  calmin isoform X4

      UniProtKB/TrEMBL
      A0A8I3MP64
      Conserved Domains (2) summary
      cd21245
      Location:118 → 223
      CH_CLMN_rpt2; second calponin homology (CH) domain found in calmin and similar proteins
      cl00030
      Location:1 → 74
      CH_SF; calponin homology (CH) domain superfamily

    5. XM_038674560.1 → XP_038530488.1  calmin isoform X5

      UniProtKB/TrEMBL
      A0A8P0PC96
      Related
      ENSCAFP00845004729.1, ENSCAFT00845005944.1
      Conserved Domains (2) summary
      cd21191
      Location:29 → 142
      CH_CLMN_rpt1; first calponin homology (CH) domain found in calmin and similar proteins
      cd21245
      Location:186 → 291
      CH_CLMN_rpt2; second calponin homology (CH) domain found in calmin and similar proteins

    6. XM_038674561.1 → XP_038530489.1  calmin isoform X6

      UniProtKB/TrEMBL
      A0A8P0PC96
      Conserved Domains (2) summary
      cd21191
      Location:29 → 142
      CH_CLMN_rpt1; first calponin homology (CH) domain found in calmin and similar proteins
      cd21245
      Location:186 → 291
      CH_CLMN_rpt2; second calponin homology (CH) domain found in calmin and similar proteins

    7. XM_038674562.1 → XP_038530490.1  calmin isoform X7

      UniProtKB/TrEMBL
      A0A8P0PC96
      Conserved Domains (2) summary
      cd21191
      Location:29 → 142
      CH_CLMN_rpt1; first calponin homology (CH) domain found in calmin and similar proteins
      cd21245
      Location:186 → 291
      CH_CLMN_rpt2; second calponin homology (CH) domain found in calmin and similar proteins

    RNA

    1. XR_005431439.1 RNA Sequence

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049268.1 Alternate UMICH_Zoey_3.1

      Range
      64020545..64135735 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038484139.1 → XP_038340067.1  LOW QUALITY PROTEIN: calmin isoform X2

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049749.1 Alternate UNSW_CanFamBas_1.0

      Range
      64079395..64194759 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038609748.1 → XP_038465676.1  calmin isoform X3

      Conserved Domains (2) summary
      cd21245
      Location:155 → 260
      CH_CLMN_rpt2; second calponin homology (CH) domain found in calmin and similar proteins
      cl00030
      Location:29 → 110
      CH_SF; calponin homology (CH) domain superfamily

    2. XM_038609747.1 → XP_038465675.1  calmin isoform X2

      Conserved Domains (2) summary
      cd21191
      Location:29 → 142
      CH_CLMN_rpt1; first calponin homology (CH) domain found in calmin and similar proteins
      cd21245
      Location:186 → 291
      CH_CLMN_rpt2; second calponin homology (CH) domain found in calmin and similar proteins

    3. XM_038609746.1 → XP_038465674.1  calmin isoform X1

      Conserved Domains (2) summary
      cd21191
      Location:29 → 142
      CH_CLMN_rpt1; first calponin homology (CH) domain found in calmin and similar proteins
      cd21245
      Location:186 → 291
      CH_CLMN_rpt2; second calponin homology (CH) domain found in calmin and similar proteins

    4. XM_038609749.1 → XP_038465677.1  calmin isoform X4

    5. XM_038609750.1 → XP_038465678.1  calmin isoform X5

      Conserved Domains (2) summary
      cd21191
      Location:29 → 142
      CH_CLMN_rpt1; first calponin homology (CH) domain found in calmin and similar proteins
      cd21245
      Location:186 → 291
      CH_CLMN_rpt2; second calponin homology (CH) domain found in calmin and similar proteins

    6. XM_038609751.1 → XP_038465679.1  calmin isoform X6

      Conserved Domains (2) summary
      cd21191
      Location:29 → 142
      CH_CLMN_rpt1; first calponin homology (CH) domain found in calmin and similar proteins
      cd21245
      Location:186 → 291
      CH_CLMN_rpt2; second calponin homology (CH) domain found in calmin and similar proteins

    7. XM_038609752.1 → XP_038465680.1  calmin isoform X7

      Conserved Domains (2) summary
      cd21191
      Location:29 → 142
      CH_CLMN_rpt1; first calponin homology (CH) domain found in calmin and similar proteins
      cd21245
      Location:186 → 291
      CH_CLMN_rpt2; second calponin homology (CH) domain found in calmin and similar proteins

    RNA

    1. XR_005398180.1 RNA Sequence

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049229.1 Alternate UU_Cfam_GSD_1.0

      Range
      64404347..64519672 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038545648.1 → XP_038401576.1  calmin isoform X8

      UniProtKB/TrEMBL
      A0A8C0Q922

    RNA

    1. XR_005363731.1 RNA Sequence

    2. XR_005363730.1 RNA Sequence

    3. XR_005363729.1 RNA Sequence

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006590.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      63665167..63770741 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038594627.1 → XP_038450555.1  calmin isoform X3

      UniProtKB/TrEMBL
      A0A8C0MTK1, A0A8P0NRU9
      Conserved Domains (2) summary
      cd21245
      Location:155 → 260
      CH_CLMN_rpt2; second calponin homology (CH) domain found in calmin and similar proteins
      cl00030
      Location:29 → 110
      CH_SF; calponin homology (CH) domain superfamily

    2. XM_038594620.1 → XP_038450548.1  calmin isoform X2

      UniProtKB/TrEMBL
      A0A8C0MUT5, A0A8C0Q922, A0A8P0NIV5
      Conserved Domains (2) summary
      cd21191
      Location:29 → 142
      CH_CLMN_rpt1; first calponin homology (CH) domain found in calmin and similar proteins
      cd21245
      Location:186 → 291
      CH_CLMN_rpt2; second calponin homology (CH) domain found in calmin and similar proteins

    3. XM_038594612.1 → XP_038450540.1  calmin isoform X1

      UniProtKB/TrEMBL
      A0A8C0Q922
      Conserved Domains (2) summary
      cd21191
      Location:29 → 142
      CH_CLMN_rpt1; first calponin homology (CH) domain found in calmin and similar proteins
      cd21245
      Location:186 → 291
      CH_CLMN_rpt2; second calponin homology (CH) domain found in calmin and similar proteins

    4. XM_014116141.3 → XP_013971616.1  calmin isoform X4

      UniProtKB/TrEMBL
      A0A8C0Q922
      Conserved Domains (2) summary
      COG5069
      Location:3 → 229
      SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
      pfam00307
      Location:123 → 223
      CH; Calponin homology (CH) domain

    5. XM_038594646.1 → XP_038450574.1  calmin isoform X5

      UniProtKB/TrEMBL
      A0A8P0PC96
      Conserved Domains (2) summary
      cd21191
      Location:29 → 142
      CH_CLMN_rpt1; first calponin homology (CH) domain found in calmin and similar proteins
      cd21245
      Location:186 → 291
      CH_CLMN_rpt2; second calponin homology (CH) domain found in calmin and similar proteins

    6. XM_038594657.1 → XP_038450585.1  calmin isoform X6

      UniProtKB/TrEMBL
      A0A8P0PC96
      Conserved Domains (2) summary
      cd21191
      Location:29 → 142
      CH_CLMN_rpt1; first calponin homology (CH) domain found in calmin and similar proteins
      cd21245
      Location:186 → 291
      CH_CLMN_rpt2; second calponin homology (CH) domain found in calmin and similar proteins

    7. XM_038594666.1 → XP_038450594.1  calmin isoform X7

      UniProtKB/TrEMBL
      A0A8P0PC96
      Conserved Domains (2) summary
      cd21191
      Location:29 → 142
      CH_CLMN_rpt1; first calponin homology (CH) domain found in calmin and similar proteins
      cd21245
      Location:186 → 291
      CH_CLMN_rpt2; second calponin homology (CH) domain found in calmin and similar proteins

    RNA

    1. XR_005390010.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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