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    c transcriptional repressor [ Rhizobium phage 16-3 ]

    Gene ID: 6654090, updated on 21-Jun-2023

    Summary

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    Gene symbol
    c
    Gene description
    transcriptional repressor
    Locus tag
    RM163_067
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rhizobium phage 16-3
    Lineage
    Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Siphoviridae
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    Genomic context

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    Sequence:
    NC_011103.1 (35673..36464, complement)

    NC_011103.1Genomic Context describing neighboring genes Neighboring gene p063 Neighboring gene p064 Neighboring gene p065 Neighboring gene p066 Neighboring gene p068 Neighboring gene p069 Neighboring gene helix-turn-helix domain-containing protein Neighboring gene p71

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_011103.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of tail genes in the temperate phage 16-3 of Sinorhizobium meliloti 41. Deák V, et al. J Bacteriol, 2010 Mar. PMID 20081029, Free PMC Article
    2. Identification of cohesive ends and genes encoding the terminase of phage 16-3. Ganyu A, et al. J Bacteriol, 2005 Apr. PMID 15774897, Free PMC Article
    3. H protein of bacteriophage 16-3 and RkpM protein of Sinorhizobium meliloti 41 are involved in phage adsorption. Putnoky P, et al. J Bacteriol, 2004 Mar. PMID 14996788, Free PMC Article
    4. immX immunity region of rhizobium phage 16-3: two overlapping cistrons of repressor function. Csiszovszki Z, et al. J Bacteriol, 2003 Aug. PMID 12867446, Free PMC Article
    5. Binding sites of different geometries for the 16-3 phage repressor. Papp PP, et al. Proc Natl Acad Sci U S A, 2002 Jun 25. PMID 12084925, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Miscellaneous features

    • Loc: c36443 alternative start for C repressor protein; results in a 7 AA shorter product; the ratio of normal length and alternative product is 1:1 experiment = confirmed by N-terminal protein sequencing

    General protein information

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    Preferred Names
    transcriptional repressor

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_011103.1 Reference assembly

      Range
      35673..36464 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_002117625.1 transcriptional repressor [Rhizobium phage 16-3]

      See identical proteins and their annotated locations for YP_002117625.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      B4UTV5, P15238, Q9MCD2
      Conserved Domains (5) summary
      cd06529
      Location:169 → 257
      S24_LexA-like; Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell. This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC ...
      smart00530
      Location:15 → 67
      HTH_XRE; Helix-turn-helix XRE-family like proteins
      COG1396
      Location:15 → 113
      HipB; Transcriptional regulator, contains XRE-family HTH domain [Transcription]
      COG2932
      Location:123 → 256
      COG2932; Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains [Mobilome: prophages, transposons]
      cl14633
      Location:54 → 93
      DD; Death Domain Superfamily of protein-protein interaction domains
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P15238.4

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