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    patz1 POZ/BTB and AT hook containing zinc finger 1 [ Pimephales promelas (fathead minnow) ]

    Gene ID: 120491636, updated on 21-Mar-2024

    Summary

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    Gene symbol
    patz1
    Gene description
    POZ/BTB and AT hook containing zinc finger 1
    Locus tag
    F2P79_015629
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pimephales promelas
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Leuciscidae; Pogonichthyinae; Pimephales
    Orthologs
    human zebrafish all
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    Genomic context

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    See patz1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    100 current EPA_FHM_2.0 (GCF_016745375.1) Unplaced Scaffold NW_024121355.1 (8071764..8080088)

    NW_024121355.1Genomic Context describing neighboring genes Neighboring gene SFI1 centrin binding protein Neighboring gene eukaryotic translation initiation factor 4E nuclear import factor 1 Neighboring gene uncharacterized LOC120491637 Neighboring gene solute carrier family 2 member 11a Neighboring gene transforming growth factor, alpha

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024121355 Unplaced Scaffold Reference EPA_FHM_2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cytokine production IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of immune system process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    POZ-, AT hook-, and zinc finger-containing protein 1
    Names
    myc-associated zinc finger protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Pimephales promelas Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EPA_FHM_2.0 Primary Assembly

    Genomic

    1. NW_024121355.1 Reference EPA_FHM_2.0 Primary Assembly

      Range
      8071764..8080088
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039689596.1 → XP_039545530.1  POZ-, AT hook-, and zinc finger-containing protein 1 isoform X1

      Conserved Domains (5) summary
      COG5048
      Location:350 → 489
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:326 → 346
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:413 → 433
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18207
      Location:11 → 138
      BTB_POZ_ZBTB19_PATZ1; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in POZ-, AT hook-, and zinc finger-containing protein 1 (PATZ1)
      pfam16637
      Location:596 → 668
      zf-C2H2_assoc3; Putative zinc-finger between two C2H2 zinc-fingers on Patz

    2. XM_039689598.1 → XP_039545532.1  POZ-, AT hook-, and zinc finger-containing protein 1 isoform X2

      Conserved Domains (5) summary
      COG5048
      Location:350 → 489
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:326 → 346
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:413 → 433
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18207
      Location:11 → 138
      BTB_POZ_ZBTB19_PATZ1; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in POZ-, AT hook-, and zinc finger-containing protein 1 (PATZ1)
      pfam16637
      Location:513 → 598
      zf-C2H2_assoc3; Putative zinc-finger between two C2H2 zinc-fingers on Patz

    3. XM_039689599.1 → XP_039545533.1  POZ-, AT hook-, and zinc finger-containing protein 1 isoform X3

      Conserved Domains (5) summary
      COG5189
      Location:348 → 405
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:326 → 346
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18207
      Location:11 → 138
      BTB_POZ_ZBTB19_PATZ1; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in POZ-, AT hook-, and zinc finger-containing protein 1 (PATZ1)
      pfam13912
      Location:411 → 436
      zf-C2H2_6; C2H2-type zinc finger
      pfam16637
      Location:461 → 544
      zf-C2H2_assoc3; Putative zinc-finger between two C2H2 zinc-fingers on Patz
    Nucleotide Protein
    Heading Accession and Version

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