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    hnrnpua heterogeneous nuclear ribonucleoprotein Ua [ Carcharodon carcharias (great white shark) ]

    Gene ID: 121270941, updated on 22-Mar-2024

    Summary

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    Gene symbol
    hnrnpua
    Gene description
    heterogeneous nuclear ribonucleoprotein Ua
    See related
    EnsemblRapid:ENSCHSG00020011409
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Carcharodon carcharias
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Lamniformes; Alopiidae; Carcharodon
    Orthologs
    human zebrafish all
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    Genomic context

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    See hnrnpua in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    100 current sCarCar2.pri (GCF_017639515.1) 2 NC_054468.1 (222142260..222162660)

    Chromosome 2 - NC_054468.1Genomic Context describing neighboring genes Neighboring gene kinesin family member 26Ba Neighboring gene EF-hand calcium binding domain 2 Neighboring gene cytochrome c oxidase assembly protein COX20, mitochondrial Neighboring gene tetraspanin 33b

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_054468.1 Chromosome 2 Reference sCarCar2.pri Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II C-terminal domain binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables TFIIH-class transcription factor complex binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables poly(C) RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables poly(G) binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pre-mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables promoter-specific chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ribonucleoprotein complex binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables snRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription corepressor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in CRD-mediated mRNA stabilization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in RNA localization to chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of telomere maintenance via telomerase IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of attachment of mitotic spindle microtubules to kinetochore IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of alternative mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of chromatin organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of mitotic spindle assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of CRD-mediated mRNA stability complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of catalytic step 2 spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in centrosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasmic ribonucleoprotein granule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in inactive sex chromosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in kinetochore IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in mitotic spindle microtubule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in mitotic spindle midzone IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nuclear chromosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nuclear matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nuclear speck IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of telomerase holoenzyme complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    heterogeneous nuclear ribonucleoprotein U

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Carcharodon carcharias Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference sCarCar2.pri Primary Assembly

    Genomic

    1. NC_054468.1 Reference sCarCar2.pri Primary Assembly

      Range
      222142260..222162660
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041176612.1 → XP_041032546.1  heterogeneous nuclear ribonucleoprotein U isoform X1

      Conserved Domains (3) summary
      smart00513
      Location:6 → 40
      SAP; Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation
      cd12884
      Location:339 → 515
      SPRY_hnRNP; SPRY domain in heterogeneous nuclear ribonucleoprotein U-like (hnRNP) protein 1
      cl17190
      Location:550 → 697
      NK; Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates ...

    2. XM_041176622.1 → XP_041032556.1  heterogeneous nuclear ribonucleoprotein U isoform X2

      Related
      ENSCHSP00020019731.1, ENSCHST00020021830.1
      Conserved Domains (3) summary
      smart00513
      Location:6 → 40
      SAP; Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation
      cd12884
      Location:339 → 515
      SPRY_hnRNP; SPRY domain in heterogeneous nuclear ribonucleoprotein U-like (hnRNP) protein 1
      cl17190
      Location:550 → 697
      NK; Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates ...
    Nucleotide Protein
    Heading Accession and Version

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