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    ToRSVs2gp1 polyprotein [ Tomato ringspot virus ]

    Gene ID: 956646, updated on 18-Aug-2023

    Summary

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    Gene symbol
    ToRSVs2gp1
    Gene description
    polyprotein
    Locus tag
    ToRSVs2gp1
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Tomato ringspot virus
    Lineage
    Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; Secoviridae; Comovirinae; Nepovirus
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    Genomic context

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    Location:
    segment: RNA 2
    Sequence:
    NC_003839.2 (76..5724)

    NC_003839.2Genomic Context describing neighboring genes

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003839.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Nucleotide sequence and in vitro expression of the capsid protein gene of tobacco ringspot virus. Buckley B, et al. Virus Res, 1993 Dec. PMID 8109164
    2. Nucleotide sequence of tomato ringspot virus RNA-2. Rott ME, et al. J Gen Virol, 1991 Jul. PMID 1856689

    GeneRIFs: Gene References Into Functions

    General gene information

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    Miscellaneous features

    • Loc: 439-441 second in-frame AUG. It's in a favourable Kozak context (tgcaatgga).

    Repeated regions

    • Loc: 1735-2169 rpt_type = tandem , rpt_unit_range = 1737..1893 , rpt_unit_range = 1894..2052 , rpt_unit_range = 2053..2169

    General protein information

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    Preferred Names
    polyprotein
    Names
    hypothetical peptide
    movement protein
    capsid protein
    NP_620762.1
    • putative coat protein (60-62K) at the C-terminal region

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003839.2 Reference assembly

      Range
      76..5724
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_620762.1 polyprotein [Tomato ringspot virus]

      See identical proteins and their annotated locations for NP_620762.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P25247
      UniProtKB/TrEMBL
      A0A097GWW8
      Conserved Domains (3) summary
      pfam03688
      Location:1668 → 1827
      Nepo_coat_C; Nepovirus coat protein, C-terminal domain
      pfam03689
      Location:1331 → 1421
      Nepo_coat_N; Nepovirus coat protein, N-terminal domain
      pfam03391
      Location:1497 → 1662
      Nepo_coat; Nepovirus coat protein, central domain

    2. NP_733971.2 hypothetical peptide

    3. NP_733972.2 movement protein

    4. NP_733973.1 capsid protein

      UniProtKB/TrEMBL
      A3FEN2
      Conserved Domains (3) summary
      pfam03688
      Location:348 → 507
      Nepo_coat_C; Nepovirus coat protein, C-terminal domain
      pfam03689
      Location:11 → 101
      Nepo_coat_N; Nepovirus coat protein, N-terminal domain
      pfam03391
      Location:177 → 342
      Nepo_coat; Nepovirus coat protein, central domain
    Nucleotide Protein
    Heading Accession and Version

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