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    LOC112216130 ankyrin repeat and SAM domain-containing protein 1A-like [ Oncorhynchus tshawytscha (Chinook salmon) ]

    Gene ID: 112216130, updated on 18-Jun-2024

    Summary

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    Gene symbol
    LOC112216130
    Gene description
    ankyrin repeat and SAM domain-containing protein 1A-like
    See related
    Ensembl:ENSOTSG00005018633
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oncorhynchus tshawytscha
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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    Genomic context

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    See LOC112216130 in Genome Data Viewer
    Location:
    chromosome: LG16
    Exon count:
    29
    Annotation release Status Assembly LG Location
    101 current Otsh_v2.0 (GCF_018296145.1) LG16 NC_056444.1 (65510439..65619965, complement)
    100 previous assembly Otsh_v1.0 (GCF_002872995.1) Chromosome 16 NC_037112.1 (54027337..54059161, complement)

    Linkage Group LG16 - NC_056444.1Genomic Context describing neighboring genes Neighboring gene specifically androgen-regulated gene protein Neighboring gene major histocompatibility complex class I-related gene protein-like Neighboring gene UHRF1-binding protein 1 Neighboring gene TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ankyrin repeat and SAM domain-containing protein 1A-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oncorhynchus tshawytscha Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Otsh_v2.0 Primary Assembly

    Genomic

    1. NC_056444.1 Reference Otsh_v2.0 Primary Assembly

      Range
      65510439..65619965 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_042299500.1 → XP_042155434.1  ankyrin repeat and SAM domain-containing protein 1A-like isoform X4

      UniProtKB/TrEMBL
      A0A8C8FRX2
      Conserved Domains (6) summary
      cd09499
      Location:747 → 811
      SAM_AIDA1AB-like_repeat1; SAM domain of AIDA1AB-like proteins, repeat 1
      cd09500
      Location:814 → 878
      SAM_AIDA1AB-like_repeat2; SAM domain of AIDA1AB-like proteins, repeat 2
      cd01274
      Location:978 → 1123
      PTB_Anks; Ankyrin repeat and sterile alpha motif (SAM) domain-containing (Anks) protein family Phosphotyrosine-binding (PTB) domain
      sd00045
      Location:163 → 194
      ANK; ANK repeat [structural motif]
      pfam13637
      Location:264 → 300
      Ank_4; Ankyrin repeats (many copies)
      cl39094
      Location:63 → 259
      Ank_2; Ankyrin repeats (3 copies)

    2. XM_042299502.1 → XP_042155436.1  ankyrin repeat and SAM domain-containing protein 1A-like isoform X6

      UniProtKB/TrEMBL
      A0A8C8FRX2
      Related
      ENSOTSP00005149076.1, ENSOTST00005160561.1
      Conserved Domains (6) summary
      cd09499
      Location:747 → 811
      SAM_AIDA1AB-like_repeat1; SAM domain of AIDA1AB-like proteins, repeat 1
      cd09500
      Location:814 → 878
      SAM_AIDA1AB-like_repeat2; SAM domain of AIDA1AB-like proteins, repeat 2
      cd01274
      Location:978 → 1123
      PTB_Anks; Ankyrin repeat and sterile alpha motif (SAM) domain-containing (Anks) protein family Phosphotyrosine-binding (PTB) domain
      sd00045
      Location:163 → 194
      ANK; ANK repeat [structural motif]
      pfam13637
      Location:264 → 300
      Ank_4; Ankyrin repeats (many copies)
      cl39094
      Location:63 → 259
      Ank_2; Ankyrin repeats (3 copies)

    3. XM_042299505.1 → XP_042155439.1  ankyrin repeat and SAM domain-containing protein 1A-like isoform X9

      UniProtKB/TrEMBL
      A0A8C8FRX2
      Related
      ENSOTSP00005146809.1, ENSOTST00005183880.1
      Conserved Domains (5) summary
      PHA02874
      Location:63 → 270
      PHA02874; ankyrin repeat protein; Provisional
      cd09499
      Location:725 → 789
      SAM_AIDA1AB-like_repeat1; SAM domain of AIDA1AB-like proteins, repeat 1
      cd09500
      Location:792 → 856
      SAM_AIDA1AB-like_repeat2; SAM domain of AIDA1AB-like proteins, repeat 2
      cd01274
      Location:956 → 1101
      PTB_Anks; Ankyrin repeat and sterile alpha motif (SAM) domain-containing (Anks) protein family Phosphotyrosine-binding (PTB) domain
      sd00045
      Location:141 → 172
      ANK; ANK repeat [structural motif]

    4. XM_042299504.1 → XP_042155438.1  ankyrin repeat and SAM domain-containing protein 1A-like isoform X8

      UniProtKB/TrEMBL
      A0A8C8CCQ1
      Related
      ENSOTSP00005106617.1, ENSOTST00005182104.1
      Conserved Domains (6) summary
      cd09499
      Location:726 → 790
      SAM_AIDA1AB-like_repeat1; SAM domain of AIDA1AB-like proteins, repeat 1
      cd09500
      Location:793 → 857
      SAM_AIDA1AB-like_repeat2; SAM domain of AIDA1AB-like proteins, repeat 2
      cd01274
      Location:957 → 1102
      PTB_Anks; Ankyrin repeat and sterile alpha motif (SAM) domain-containing (Anks) protein family Phosphotyrosine-binding (PTB) domain
      sd00045
      Location:163 → 194
      ANK; ANK repeat [structural motif]
      pfam13637
      Location:264 → 300
      Ank_4; Ankyrin repeats (many copies)
      cl39094
      Location:63 → 259
      Ank_2; Ankyrin repeats (3 copies)

    5. XM_042299501.1 → XP_042155435.1  ankyrin repeat and SAM domain-containing protein 1A-like isoform X5

      UniProtKB/TrEMBL
      A0A8C8FRX2
      Conserved Domains (7) summary
      cd09499
      Location:745 → 809
      SAM_AIDA1AB-like_repeat1; SAM domain of AIDA1AB-like proteins, repeat 1
      cd09500
      Location:812 → 876
      SAM_AIDA1AB-like_repeat2; SAM domain of AIDA1AB-like proteins, repeat 2
      cd01274
      Location:976 → 1121
      PTB_Anks; Ankyrin repeat and sterile alpha motif (SAM) domain-containing (Anks) protein family Phosphotyrosine-binding (PTB) domain
      pfam05109
      Location:443 → 718
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      sd00045
      Location:163 → 194
      ANK; ANK repeat [structural motif]
      pfam13637
      Location:264 → 300
      Ank_4; Ankyrin repeats (many copies)
      cl39094
      Location:63 → 259
      Ank_2; Ankyrin repeats (3 copies)

    6. XM_042299498.1 → XP_042155432.1  ankyrin repeat and SAM domain-containing protein 1A-like isoform X2

      UniProtKB/TrEMBL
      A0A8C8FRX2
      Conserved Domains (7) summary
      cd09499
      Location:746 → 810
      SAM_AIDA1AB-like_repeat1; SAM domain of AIDA1AB-like proteins, repeat 1
      cd09500
      Location:813 → 877
      SAM_AIDA1AB-like_repeat2; SAM domain of AIDA1AB-like proteins, repeat 2
      cd01274
      Location:977 → 1122
      PTB_Anks; Ankyrin repeat and sterile alpha motif (SAM) domain-containing (Anks) protein family Phosphotyrosine-binding (PTB) domain
      pfam05109
      Location:443 → 719
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      sd00045
      Location:163 → 194
      ANK; ANK repeat [structural motif]
      pfam13637
      Location:264 → 300
      Ank_4; Ankyrin repeats (many copies)
      cl39094
      Location:63 → 259
      Ank_2; Ankyrin repeats (3 copies)

    7. XM_042299503.1 → XP_042155437.1  ankyrin repeat and SAM domain-containing protein 1A-like isoform X7

      UniProtKB/TrEMBL
      A0A8C8FRX2
      Conserved Domains (6) summary
      cd09499
      Location:731 → 795
      SAM_AIDA1AB-like_repeat1; SAM domain of AIDA1AB-like proteins, repeat 1
      cd09500
      Location:798 → 862
      SAM_AIDA1AB-like_repeat2; SAM domain of AIDA1AB-like proteins, repeat 2
      cd01274
      Location:962 → 1107
      PTB_Anks; Ankyrin repeat and sterile alpha motif (SAM) domain-containing (Anks) protein family Phosphotyrosine-binding (PTB) domain
      sd00045
      Location:163 → 194
      ANK; ANK repeat [structural motif]
      pfam13637
      Location:264 → 300
      Ank_4; Ankyrin repeats (many copies)
      cl39094
      Location:63 → 259
      Ank_2; Ankyrin repeats (3 copies)

    8. XM_042299499.1 → XP_042155433.1  ankyrin repeat and SAM domain-containing protein 1A-like isoform X3

      UniProtKB/TrEMBL
      A0A8C8FRX2
      Conserved Domains (6) summary
      cd09499
      Location:746 → 810
      SAM_AIDA1AB-like_repeat1; SAM domain of AIDA1AB-like proteins, repeat 1
      cd09500
      Location:813 → 877
      SAM_AIDA1AB-like_repeat2; SAM domain of AIDA1AB-like proteins, repeat 2
      cd01274
      Location:977 → 1122
      PTB_Anks; Ankyrin repeat and sterile alpha motif (SAM) domain-containing (Anks) protein family Phosphotyrosine-binding (PTB) domain
      sd00045
      Location:163 → 194
      ANK; ANK repeat [structural motif]
      pfam13637
      Location:264 → 300
      Ank_4; Ankyrin repeats (many copies)
      cl39094
      Location:63 → 259
      Ank_2; Ankyrin repeats (3 copies)

    9. XM_042299497.1 → XP_042155431.1  ankyrin repeat and SAM domain-containing protein 1A-like isoform X1

      UniProtKB/TrEMBL
      A0A8C8FRX2
      Conserved Domains (6) summary
      cd09499
      Location:747 → 811
      SAM_AIDA1AB-like_repeat1; SAM domain of AIDA1AB-like proteins, repeat 1
      cd09500
      Location:814 → 878
      SAM_AIDA1AB-like_repeat2; SAM domain of AIDA1AB-like proteins, repeat 2
      cd01274
      Location:978 → 1123
      PTB_Anks; Ankyrin repeat and sterile alpha motif (SAM) domain-containing (Anks) protein family Phosphotyrosine-binding (PTB) domain
      sd00045
      Location:163 → 194
      ANK; ANK repeat [structural motif]
      pfam13637
      Location:264 → 300
      Ank_4; Ankyrin repeats (many copies)
      cl39094
      Location:63 → 259
      Ank_2; Ankyrin repeats (3 copies)

    10. XM_042299506.1 → XP_042155440.1  ankyrin repeat and SAM domain-containing protein 1A-like isoform X10

      UniProtKB/TrEMBL
      A0A8C8CI02
      Conserved Domains (3) summary
      cd09499
      Location:152 → 216
      SAM_AIDA1AB-like_repeat1; SAM domain of AIDA1AB-like proteins, repeat 1
      cd09500
      Location:219 → 283
      SAM_AIDA1AB-like_repeat2; SAM domain of AIDA1AB-like proteins, repeat 2
      cd01274
      Location:383 → 528
      PTB_Anks; Ankyrin repeat and sterile alpha motif (SAM) domain-containing (Anks) protein family Phosphotyrosine-binding (PTB) domain

    11. XM_042299507.1 → XP_042155441.1  ankyrin repeat and SAM domain-containing protein 1A-like isoform X11

      Conserved Domains (3) summary
      cd09499
      Location:41 → 105
      SAM_AIDA1AB-like_repeat1; SAM domain of AIDA1AB-like proteins, repeat 1
      cd09500
      Location:108 → 172
      SAM_AIDA1AB-like_repeat2; SAM domain of AIDA1AB-like proteins, repeat 2
      cd01274
      Location:272 → 417
      PTB_Anks; Ankyrin repeat and sterile alpha motif (SAM) domain-containing (Anks) protein family Phosphotyrosine-binding (PTB) domain

    RNA

    1. XR_006079088.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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