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    TMEM115 transmembrane protein 115 [ Lagopus leucura (white-tailed ptarmigan) ]

    Gene ID: 122194197, updated on 22-Mar-2024

    Summary

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    Gene symbol
    TMEM115
    Gene description
    transmembrane protein 115
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lagopus leucura
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Tetraoninae; Lagopus
    Orthologs
    human mouse all
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    Genomic context

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    See TMEM115 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    100 current USGS_WTPT01 (GCF_019238085.1) Unplaced Scaffold NW_024969557.1 (20504..23157, complement)

    NW_024969557.1Genomic Context describing neighboring genes Neighboring gene zinc finger MYND-type containing 10 Neighboring gene NPR2 like, GATOR1 complex subunit Neighboring gene transmembrane reductase CYB561D2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024969557 Unplaced Scaffold Reference USGS_WTPT01

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transmembrane protein 115

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Lagopus leucura Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference USGS_WTPT01

    Genomic

    1. NW_024969557.1 Reference USGS_WTPT01

      Range
      20504..23157 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_042895120.1 → XP_042751054.1  transmembrane protein 115 isoform X2

      Conserved Domains (1) summary
      pfam08551
      Location:50 → 152
      DUF1751; Eukaryotic integral membrane protein (DUF1751)

    2. XM_042895119.1 → XP_042751053.1  transmembrane protein 115 isoform X1

      Conserved Domains (1) summary
      pfam08551
      Location:50 → 152
      DUF1751; Eukaryotic integral membrane protein (DUF1751)
    Nucleotide Protein
    Heading Accession and Version

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