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    JMJD6 arginine demethylase and lysine hydroxylase [ Gallus gallus (chicken) ]

    Gene ID: 417355, updated on 17-Aug-2024

    Summary

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    Symbol
    JMJD6provided by CGNC
    Full Name
    arginine demethylase and lysine hydroxylaseprovided by CGNC
    Primary source
    CGNC:1268
    See related
    Ensembl:ENSGALG00010029375
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    PTDSR
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 18
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 18 NC_052549.1 (4873109..4884228)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 18 NC_052590.1 (4476803..4487921)

    Chromosome 18 - NC_052549.1Genomic Context describing neighboring genes Neighboring gene alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B Neighboring gene major facilitator superfamily domain containing 11 Neighboring gene methyltransferase like 23 Neighboring gene serine and arginine rich splicing factor 2 Neighboring gene matrix remodeling associated 7 Neighboring gene ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables P-TEFb complex binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone H4R3 demethylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in phagocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    bifunctional arginine demethylase and lysyl-hydroxylase JMJD6
    Names
    Protein PTDSR
    histone arginine demethylase JMJD6
    jmjC domain-containing protein 6
    jumonji domain-containing protein 6
    lysyl-hydroxylase JMJD6
    peptide-lysine 5-dioxygenase JMJD6
    phosphatidylserine receptor
    NP_001025874.2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001030703.2 → NP_001025874.2  bifunctional arginine demethylase and lysyl-hydroxylase JMJD6

      Status: PROVISIONAL

      Source sequence(s)
      JAENSK010000316
      UniProtKB/Swiss-Prot
      Q5ZMK5
      UniProtKB/TrEMBL
      A0A8V1AHW9
      Related
      ENSGALP00010043737.1, ENSGALT00010071046.1
      Conserved Domains (1) summary
      pfam02373
      Location:174 → 288
      JmjC; JmjC domain, hydroxylase

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052549.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      4873109..4884228
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052590.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      4476803..4487921
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5ZMK5.1 GenPept UniProtKB/Swiss-Prot:Q5ZMK5

    Gene LinkOut

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