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    LOC122919948 exosome complex component RRP4-like [ Bufo gargarizans (Asiatic toad) ]

    Gene ID: 122919948, updated on 11-Apr-2024

    Summary

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    Gene symbol
    LOC122919948
    Gene description
    exosome complex component RRP4-like
    See related
    EnsemblRapid:ENSBGGG00000017664
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Bufo gargarizans
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Neobatrachia; Hyloidea; Bufonidae; Bufo
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    Genomic context

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    See LOC122919948 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    100 current ASM1485885v1 (GCF_014858855.1) 9 NC_058088.1 (194652500..194666819, complement)

    Chromosome 9 - NC_058088.1Genomic Context describing neighboring genes Neighboring gene tyrosine-protein kinase ABL1-like Neighboring gene 5S ribosomal RNA Neighboring gene rap guanine nucleotide exchange factor 1-like Neighboring gene proline rich transmembrane protein 1B-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_058088.1 Chromosome 9 Reference ASM1485885v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in CUT catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in TRAMP-dependent tRNA surveillance pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in U4 snRNA 3'-end processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nuclear polyadenylation-dependent rRNA catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in poly(A)-dependent snoRNA 3'-end processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytoplasmic exosome (RNase complex) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of nuclear exosome (RNase complex) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    exosome complex component RRP4-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Bufo gargarizans Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1485885v1 Primary Assembly

    Genomic

    1. NC_058088.1 Reference ASM1485885v1 Primary Assembly

      Range
      194652500..194666819 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_044269197.1 → XP_044125132.1  exosome complex component RRP4-like

      Related
      ENSBGGP00000023513.1, ENSBGGT00000025919.1
      Conserved Domains (1) summary
      COG1097
      Location:27 → 242
      Rrp4; Exosome complex RNA-binding protein Rrp4, contains S1 and KH domains [Translation, ribosomal structure and biogenesis]
    Nucleotide Protein
    Heading Accession and Version

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