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    LOC4346217 sorbitol dehydrogenase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346217, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4346217
    Gene description
    sorbitol dehydrogenase
    Locus tag
    OSNPB_080545200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1323_A06.4
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    Genomic context

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    See LOC4346217 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (27463041..27465329)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (27315915..27318262)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene hydroxymethylglutaryl-CoA synthase Neighboring gene uncharacterized LOC4346216 Neighboring gene dehydration-responsive element-binding protein 1J Neighboring gene dehydration-responsive element-binding protein 1I

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sorbitol dehydrogenase
    Names
    Os08g0545200
    P0623F08.37
    putative sorbitol dehydrogenase
    NP_001409600.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422671.1 → NP_001409600.1  sorbitol dehydrogenase

      Status: VALIDATED

      Source sequence(s)
      AK101517
      UniProtKB/TrEMBL
      Q0J3Y9, Q6ZBH2, Q6ZFX1

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      27463041..27465329
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      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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