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    LOC4331282 deSI-like protein At4g17486 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331282, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4331282
    Gene description
    deSI-like protein At4g17486
    Locus tag
    OSNPB_030100900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 15.9), roots after flowering (RPKM 14.4) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (107850..111008)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (100630..103927)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4331280 Neighboring gene plasma membrane ATPase 1 Neighboring gene uncharacterized LOC4331284 Neighboring gene uncharacterized LOC107278367 Neighboring gene U-box domain-containing protein 52

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    deSI-like protein At4g17486
    Names
    Os03g0100900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      107850..111008
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015775706.3 → XP_015631192.1  deSI-like protein At4g17486 isoform X1

      Conserved Domains (1) summary
      pfam05903
      Location:51 → 183
      Peptidase_C97; PPPDE putative peptidase domain

    2. XM_015775707.3 → XP_015631193.1  deSI-like protein At4g17486 isoform X2

      UniProtKB/TrEMBL
      A0A8J8YDQ2, B8AL02, B9F9Z9, Q0DW26, Q10T56
      Conserved Domains (1) summary
      pfam05903
      Location:51 → 184
      Peptidase_C97; PPPDE putative peptidase domain
    Nucleotide Protein
    Heading Accession and Version

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