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    LOC4347518 L-ascorbate oxidase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347518, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4347518
    Gene description
    L-ascorbate oxidase
    Locus tag
    OSNPB_090507300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4347518 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (24073747..24076138)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (19662808..19665302)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene squamosa promoter-binding-like protein 18 Neighboring gene MADS-box transcription factor 8-like Neighboring gene uncharacterized LOC4347519 Neighboring gene peroxidase 73

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables copper ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    L-ascorbate oxidase
    Names
    Os09g0507300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      24073747..24076138
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015755566.3 → XP_015611052.1  L-ascorbate oxidase

      UniProtKB/TrEMBL
      A0A0P0XPM3, A0A8J8XW93, A2Z2X3, A3C0G5, Q0J0J1
      Conserved Domains (1) summary
      TIGR03388
      Location:25 → 569
      ascorbase; L-ascorbate oxidase, plant type
    Nucleotide Protein
    Heading Accession and Version

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