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    LOC4326652 zinc finger CCCH domain-containing protein 8-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326652, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4326652
    Gene description
    zinc finger CCCH domain-containing protein 8-like
    Locus tag
    OSNPB_010616400
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsC3H8
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    Genomic context

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    See LOC4326652 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (25047365..25053865, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (24471945..24478466, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene SCY1-like protein 2 A Neighboring gene TPR repeat-containing thioredoxin TTL1 Neighboring gene uncharacterized LOC4326653 Neighboring gene small ribosomal subunit protein mL103 (rPPR7)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger CCCH domain-containing protein 8
    Names
    LOC_Os01g42970
    P0686E09.13-1
    P0686E09.13-2
    zinc finger protein 3-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001398276.1 → NP_001385205.1  zinc finger CCCH domain-containing protein 8 isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) has the long third exon with the short second intron.
      Source sequence(s)
      AK111682
      UniProtKB/Swiss-Prot
      B7F419, Q5ZDJ6, Q5ZDJ7
      Conserved Domains (1) summary
      pfam00642
      Location:157 → 183
      zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

    2. NM_001398277.1 → NP_001385206.1  zinc finger CCCH domain-containing protein 8 isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) has the short third exon with the long second intron.
      Source sequence(s)
      AK112116
      UniProtKB/TrEMBL
      A0A8J8YBU2, B7F4K7, B9EY25
      Conserved Domains (1) summary
      pfam00642
      Location:156 → 182
      zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      25047365..25053865 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5ZDJ6.2 GenPept UniProtKB/Swiss-Prot:Q5ZDJ6

    Gene LinkOut

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