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    LOC7476695 leucine-rich repeat receptor-like serine/threonine-protein kinase SKM1 [ Populus trichocarpa (black cottonwood) ]

    Gene ID: 7476695, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC7476695
    Gene description
    leucine-rich repeat receptor-like serine/threonine-protein kinase SKM1
    Locus tag
    POPTR_018G045500v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Populus trichocarpa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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    Genomic context

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    See LOC7476695 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current P.trichocarpa_v4.1 (GCF_000002775.5) 18 NC_037302.2 (3870132..3874565, complement)
    101 previous assembly Pop_tri_v3 (GCF_000002775.4) 18 NC_037302.1 (4180690..4185097, complement)

    Chromosome 18 - NC_037302.2Genomic Context describing neighboring genes Neighboring gene GATA transcription factor 12 Neighboring gene homeobox-leucine zipper protein ATHB-8 Neighboring gene uncharacterized LOC7462918 Neighboring gene uncharacterized LOC7476694

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    leucine-rich repeat receptor-like serine/threonine-protein kinase SKM1
    Names
    probably inactive leucine-rich repeat receptor-like protein kinase At2g25790

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.trichocarpa_v4.1 Primary Assembly

    Genomic

    1. NC_037302.2 Reference P.trichocarpa_v4.1 Primary Assembly

      Range
      3870132..3874565 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002324178.4 → XP_002324214.1  leucine-rich repeat receptor-like serine/threonine-protein kinase SKM1

      See identical proteins and their annotated locations for XP_002324214.1

      UniProtKB/TrEMBL
      B9IKH2
      Conserved Domains (2) summary
      PLN00113
      Location:2 → 968
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      sd00033
      Location:99 → 121
      LRR_RI; leucine-rich repeat [structural motif]

    2. XM_024590753.2 → XP_024446521.1  leucine-rich repeat receptor-like serine/threonine-protein kinase SKM1

      UniProtKB/TrEMBL
      B9IKH2
      Conserved Domains (2) summary
      PLN00113
      Location:2 → 968
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      sd00033
      Location:99 → 121
      LRR_RI; leucine-rich repeat [structural motif]

    3. XM_024590754.2 → XP_024446522.1  leucine-rich repeat receptor-like serine/threonine-protein kinase SKM1

      UniProtKB/TrEMBL
      B9IKH2
      Conserved Domains (2) summary
      PLN00113
      Location:2 → 968
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      sd00033
      Location:99 → 121
      LRR_RI; leucine-rich repeat [structural motif]

    4. XM_024590756.2 → XP_024446524.1  leucine-rich repeat receptor-like serine/threonine-protein kinase SKM1

      UniProtKB/TrEMBL
      B9IKH2
      Conserved Domains (2) summary
      PLN00113
      Location:2 → 968
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      sd00033
      Location:99 → 121
      LRR_RI; leucine-rich repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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