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    SCMoVgp2 polyprotein P2ab [ Subterranean clover mottle virus ]

    Gene ID: 955780, updated on 15-Aug-2018

    Summary

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    Gene symbol
    SCMoVgp2
    Gene description
    polyprotein P2ab
    Locus tag
    SCMoVgp2
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Subterranean clover mottle virus (strain: p23, nat-host: Trifolium subterraneum)
    Lineage
    Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Sobemovirus
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    Genomic context

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    Sequence:
    NC_004346.1 (605..3504)

    NC_004346.1Genomic Context describing neighboring genes Neighboring gene putative movement protein Neighboring gene polyprotein P2a Neighboring gene Px Neighboring gene capsid protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_004346.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The complete nucleotide sequence of Subterranean clover mottle virus. Dwyer GI, et al. Arch Virol, 2003 Nov. PMID 14579180
    2. An essential fifth coding ORF in the sobemoviruses. Ling R, et al. Virology, 2013 Nov. PMID 23830075, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    polyprotein P2ab
    Names
    serine protease
    putative VPg protein
    RNA-dependent RNA polymerase
    NP_715627.2
    • contains VPg, serine protease and RNA-dependent RNA polymerase

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004346.1 Reference assembly

      Range
      605..3504
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_715627.2 polyprotein P2ab [Subterranean clover mottle virus]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      Q8BEQ2
      Conserved Domains (2) summary
      pfam02123
      Location:475 → 846
      RdRP_4; Viral RNA-directed RNA-polymerase
      pfam13365
      Location:169 → 290
      Trypsin_2; Trypsin-like peptidase domain

    2. NP_736579.1 serine protease

      Conserved Domains (1) summary
      cl21584
      Location:169 → 290
      Tryp_SPc; Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad ...

    3. NP_736580.1 putative VPg protein

    4. NP_736581.1 RNA-dependent RNA polymerase

      Conserved Domains (1) summary
      pfam02123
      Location:70 → 441
      RdRP_4; Viral RNA-directed RNA-polymerase
    Nucleotide Protein
    Heading Accession and Version

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