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    LOC4330306 dehydration-responsive element-binding protein 1G-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330306, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4330306
    Gene description
    dehydration-responsive element-binding protein 1G-like
    Locus tag
    OSNPB_020677300
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    ERF25; DREB1G; OsJ_007653
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    Genomic context

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    See LOC4330306 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (28141176..28142447)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (27652923..27654206)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4330305 Neighboring gene ethylene-responsive transcription factor ERF027 Neighboring gene uncharacterized LOC4330307 Neighboring gene zinc finger CCCH domain-containing protein 17-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Fine mapping of the qLOP2 and qPSR2-1 loci associated with chilling stress tolerance of wild rice seedlings. Xiao N, et al. Theor Appl Genet, 2015 Jan. PMID 25367381
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Os02g0677300 is a cold-inducible gene for the qLOP2 and qPSR2-1 loci associated with chilling stress tolerance
      Title: Fine mapping of the qLOP2 and qPSR2-1 loci associated with chilling stress tolerance of wild rice seedlings.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    dehydration-responsive element-binding protein 1G
    Names
    LOC_Os02g45450
    OSJNBb0005A04.16
    P0135D07.43
    Protein DREB1G
    putative CRT/DRE binding factor 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001416821.1 → NP_001403750.1  dehydration-responsive element-binding protein 1G

      Status: VALIDATED

      Source sequence(s)
      AK106041
      UniProtKB/Swiss-Prot
      B7E541, Q6EP77

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      28141176..28142447
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6EP77.1 GenPept UniProtKB/Swiss-Prot:Q6EP77

    Gene LinkOut

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    Research Materials