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    GOLGA8F golgin A8 family member F [ Homo sapiens (human) ]

    Gene ID: 100132565, updated on 2-Nov-2024

    Summary

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    Official Symbol
    GOLGA8Fprovided by HGNC
    Official Full Name
    golgin A8 family member Fprovided by HGNC
    Primary source
    HGNC:HGNC:32378
    See related
    Ensembl:ENSG00000153684 AllianceGenome:HGNC:32378
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Summary
    Predicted to be involved in Golgi organization. Predicted to be located in Golgi apparatus. Predicted to be active in Golgi cis cisterna; Golgi cisterna membrane; and cis-Golgi network. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Restricted expression toward testis (RPKM 35.6) See more
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    Genomic context

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    See GOLGA8F in Genome Data Viewer
    Location:
    15q13.1
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (28378638..28392021)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (26121359..26134744)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (28623784..28637167)

    Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene golgin A6 family like 24 Neighboring gene MPHOSPH10 pseudogene 7 Neighboring gene MPRA-validated peak2278 silencer Neighboring gene RNA, 7SL, cytoplasmic 238, pseudogene Neighboring gene ABCB10 pseudogene 3 Neighboring gene microRNA 4509-2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Genomic analysis of the chromosome 15q11-q13 Prader-Willi syndrome region and characterization of transcripts for GOLGA8E and WHCD1L1 from the proximal breakpoint region. Jiang YH, et al. BMC Genomics, 2008 Jan 28. PMID 18226259, Free PMC Article
    2. Violating the splicing rules: TG dinucleotides function as alternative 3' splice sites in U2-dependent introns. Szafranski K, et al. Genome Biol, 2007. PMID 17672918, Free PMC Article
    3. A comprehensive SARS-CoV-2-human protein-protein interactome reveals COVID-19 pathobiology and potential host therapeutic targets. Zhou Y, et al. Nat Biotechnol, 2023 Jan. PMID 36217030, Free PMC Article
    4. An interactome perturbation framework prioritizes damaging missense mutations for developmental disorders. Chen S, et al. Nat Genet, 2018 Jul. PMID 29892012, Free PMC Article
    5. A proteome-scale map of the human interactome network. Rolland T, et al. Cell, 2014 Nov 20. PMID 25416956, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. the apparent occurrence of an unusual TG 3' splice site in intron 11 is discussed
      Title: Violating the splicing rules: TG dinucleotides function as alternative 3' splice sites in U2-dependent introns.
    Submit: New GeneRIF Correction

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Clone Names

    • FLJ32679, FLJ59075, FLJ77521, MGC102859, MGC104696, MGC167066, DKFZp434P162

    Gene Ontology Provided by GOA

    Component Evidence Code Pubs
    located_in cis-Golgi network IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative golgin subfamily A member 8F
    Names
    golgi autoantigen, golgin subfamily a, 8F
    golgin A8 family, member F pseudogene
    golgin-like hypothetical protein LOC440321

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001350920.2 → NP_001337849.2  putative golgin subfamily A member 8F

      Status: VALIDATED

      Source sequence(s)
      AC091304
      Consensus CDS
      CCDS86437.2
      UniProtKB/Swiss-Prot
      A4FTY1, P0DX52, Q08AF8, Q1A5X9, Q8NDK0
      UniProtKB/TrEMBL
      A0AAG2TUC6
      Related
      ENSP00000456138.3, ENST00000526619.7
      Conserved Domains (1) summary
      COG1196
      Location:97 → 399
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    RNA

    1. NR_033351.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC091304
      Related
      ENST00000532622.8

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

      Range
      28378638..28392021
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_002957623.2 RNA Sequence

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_011332701.1 Reference GRCh38.p14 PATCHES

      Range
      512031..525416
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054331731.1 → XP_054187706.1  putative golgin subfamily A member 8F isoform X5

    2. XM_054331727.1 → XP_054187702.1  putative golgin subfamily A member 8F isoform X1

    3. XM_054331730.1 → XP_054187705.1  putative golgin subfamily A member 8F isoform X4

    4. XM_054331729.1 → XP_054187704.1  putative golgin subfamily A member 8F isoform X3

    5. XM_054331728.1 → XP_054187703.1  putative golgin subfamily A member 8F isoform X2

    6. XM_054331732.1 → XP_054187707.1  putative golgin subfamily A member 8F isoform X6

      UniProtKB/TrEMBL
      A0A0G2JP71

    7. XM_054331733.1 → XP_054187708.1  putative golgin subfamily A member 8F isoform X6

      UniProtKB/TrEMBL
      A0A0G2JP71

    RNA

    1. XR_008485730.1 RNA Sequence

    2. XR_008485731.1 RNA Sequence

    Reference GRCh38.p14 ALT_REF_LOCI_1

    Genomic

    1. NW_003315943.1 Reference GRCh38.p14 ALT_REF_LOCI_1

      Range
      66561..79946
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054329571.1 → XP_054185546.1  putative golgin subfamily A member 8F isoform X11

    2. XM_054329567.1 → XP_054185542.1  putative golgin subfamily A member 8F isoform X7

    3. XM_054329570.1 → XP_054185545.1  putative golgin subfamily A member 8F isoform X10

    4. XM_054329569.1 → XP_054185544.1  putative golgin subfamily A member 8F isoform X9

    5. XM_054329568.1 → XP_054185543.1  putative golgin subfamily A member 8F isoform X8

    6. XM_054329572.1 → XP_054185547.1  putative golgin subfamily A member 8F isoform X12

      UniProtKB/TrEMBL
      A0A0G2JP71

    7. XM_054329573.1 → XP_054185548.1  putative golgin subfamily A member 8F isoform X12

      UniProtKB/TrEMBL
      A0A0G2JP71

    RNA

    1. XR_008485651.1 RNA Sequence

    2. XR_008485652.1 RNA Sequence

    Reference GRCh38.p14 ALT_REF_LOCI_2

    Genomic

    1. NT_187660.1 Reference GRCh38.p14 ALT_REF_LOCI_2

      Range
      625817..639202
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054329994.1 → XP_054185969.1  putative golgin subfamily A member 8F isoform X5

    2. XM_054329990.1 → XP_054185965.1  putative golgin subfamily A member 8F isoform X1

    3. XM_054329993.1 → XP_054185968.1  putative golgin subfamily A member 8F isoform X4

    4. XM_054329992.1 → XP_054185967.1  putative golgin subfamily A member 8F isoform X3

    5. XM_054329991.1 → XP_054185966.1  putative golgin subfamily A member 8F isoform X2

    6. XM_054329995.1 → XP_054185970.1  putative golgin subfamily A member 8F isoform X6

      UniProtKB/TrEMBL
      A0A0G2JP71

    7. XM_054329996.1 → XP_054185971.1  putative golgin subfamily A member 8F isoform X6

      UniProtKB/TrEMBL
      A0A0G2JP71

    RNA

    1. XR_008485664.1 RNA Sequence

    2. XR_008485665.1 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060939.1 Alternate T2T-CHM13v2.0

      Range
      26121359..26134744
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054377162.1 → XP_054233137.1  putative golgin subfamily A member 8F isoform X19

    2. XM_054377156.1 → XP_054233131.1  putative golgin subfamily A member 8F isoform X13

    3. XM_054377160.1 → XP_054233135.1  putative golgin subfamily A member 8F isoform X17

    4. XM_054377158.1 → XP_054233133.1  putative golgin subfamily A member 8F isoform X15

    5. XM_054377157.1 → XP_054233132.1  putative golgin subfamily A member 8F isoform X14

    6. XM_054377159.1 → XP_054233134.1  putative golgin subfamily A member 8F isoform X16

    7. XM_054377161.1 → XP_054233136.1  putative golgin subfamily A member 8F isoform X18

    8. XM_054377163.1 → XP_054233138.1  putative golgin subfamily A member 8F isoform X20

      UniProtKB/TrEMBL
      A0A0G2JP71

    9. XM_054377164.1 → XP_054233139.1  putative golgin subfamily A member 8F isoform X20

      UniProtKB/TrEMBL
      A0A0G2JP71

    RNA

    1. XR_008488907.1 RNA Sequence

    2. XR_008488908.1 RNA Sequence

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001012452.2: Suppressed sequence

      Description
      NM_001012452.2: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.

    2. NM_001164328.1: Suppressed sequence

      Description
      NM_001164328.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.

    3. NR_033352.1: Suppressed sequence

      Description
      NR_033352.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript.
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P0DX52.1 GenPept UniProtKB/Swiss-Prot:P0DX52

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