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    PATR-DMA HLA class II histocompatibility antigen, DM alpha chain [ Pan troglodytes (chimpanzee) ]

    Gene ID: 100608816, updated on 30-Jul-2024

    Summary

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    Gene symbol
    PATR-DMA
    Gene description
    HLA class II histocompatibility antigen, DM alpha chain
    See related
    Ensembl:ENSPTRG00000018026
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs
    human mouse all
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    Genomic context

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    See PATR-DMA in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 5 NC_072403.2 (38829153..38837952, complement)
    RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 6 NC_072404.1 (38828752..38837944, complement)

    Chromosome 5 - NC_072403.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC129144234 Neighboring gene uncharacterized LOC100608459 Neighboring gene major histocompatibility complex, class II, DM beta Neighboring gene uncharacterized LOC129144363 Neighboring gene bromodomain containing 2 Neighboring gene HLA class II histocompatibility antigen, DO alpha chain

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in antigen processing and presentation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of MHC class II protein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    HLA class II histocompatibility antigen, DM alpha chain
    Names
    major histocompatibility complex, class II, DM alpha

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Genomic

    1. NC_072403.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

      Range
      38829153..38837952 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054685691.2 → XP_054541666.1  HLA class II histocompatibility antigen, DM alpha chain isoform X1

    2. XM_054685693.2 → XP_054541668.1  HLA class II histocompatibility antigen, DM alpha chain isoform X3

    3. XM_054685692.2 → XP_054541667.1  HLA class II histocompatibility antigen, DM alpha chain isoform X2

    Nucleotide Protein
    Heading Accession and Version

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