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    TVMVgp1 polyprotein [ Tobacco vein mottling virus ]

    Gene ID: 1494056, updated on 18-Aug-2023

    Summary

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    Gene symbol
    TVMVgp1
    Gene description
    polyprotein
    Locus tag
    TVMVgp1
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Tobacco vein mottling virus
    Lineage
    Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae; Potyvirus
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    Genomic context

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    Sequence:
    NC_001768.1 (154..9225)

    NC_001768.1Genomic Context describing neighboring genes Neighboring gene PIPO

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001768.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The nucleotide sequence of tobacco vein mottling virus RNA. Domier LL, et al. Nucleic Acids Res, 1986 Jul 11. PMID 3737407, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    polyprotein
    Names
    HC-Pro protein
    P3 protein
    CI protein
    6K2 protein
    NIa-VPg protein
    NIa-Pro protein
    coat protein
    P1 protein
    6K1 protein
    NIb protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001768.1 Reference assembly

      Range
      154..9225
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_056867.1 polyprotein [Tobacco vein mottling virus]

      See identical proteins and their annotated locations for NP_056867.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P09814, Q84898, Q84899, Q84900, Q84901, Q84902
      UniProtKB/TrEMBL
      Q88925
      Conserved Domains (10) summary
      smart00487
      Location:1202 → 1352
      DEXDc; DEAD-like helicases superfamily
      cd00046
      Location:1209 → 1336
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam01577
      Location:31 → 273
      Peptidase_S30; Potyvirus P1 protease
      pfam00271
      Location:1377 → 1490
      Helicase_C; Helicase conserved C-terminal domain
      pfam00767
      Location:2789 → 3021
      Poty_coat; Potyvirus coat protein
      pfam00851
      Location:297 → 731
      Peptidase_C6; Helper component proteinase
      pfam00863
      Location:2001 → 2231
      Peptidase_C4; Peptidase family C4
      pfam08440
      Location:1515 → 1788
      Poty_PP; Potyviridae polyprotein
      pfam13608
      Location:747 → 1181
      Potyvirid-P3; Protein P3 of Potyviral polyprotein
      cl02808
      Location:2265 → 2727
      RT_like; RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, ...

    2. NP_734329.1 HC-Pro protein

      Conserved Domains (1) summary
      pfam00851
      Location:23 → 457
      Peptidase_C6; Helper component proteinase

    3. NP_734330.1 P3 protein

      Conserved Domains (1) summary
      pfam13608
      Location:16 → 347
      Potyvirid-P3; Protein P3 of Potyviral polyprotein

    4. NP_734331.1 CI protein

      Conserved Domains (5) summary
      smart00487
      Location:72 → 222
      DEXDc; DEAD-like helicases superfamily
      cd00046
      Location:79 → 206
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam00271
      Location:247 → 360
      Helicase_C; Helicase conserved C-terminal domain
      pfam08440
      Location:385 → 613
      Poty_PP; Potyviridae polyprotein
      pfam13608
      Location:1 → 51
      Potyvirid-P3; Protein P3 of Potyviral polyprotein

    5. NP_734332.1 6K2 protein

    6. NP_734333.1 NIa-VPg protein

    7. NP_734334.1 NIa-Pro protein

      UniProtKB/TrEMBL
      Q9J0W2
      Conserved Domains (1) summary
      pfam00863
      Location:1 → 230
      Peptidase_C4; Peptidase family C4

    8. NP_734335.1 coat protein

      Conserved Domains (1) summary
      pfam00767
      Location:31 → 263
      Poty_coat; Potyvirus coat protein

    9. NP_734336.1 P1 protein

      Conserved Domains (1) summary
      pfam01577
      Location:31 → 273
      Peptidase_S30; Potyvirus P1 protease

    10. NP_734337.1 6K1 protein

      Conserved Domains (1) summary
      pfam13608
      Location:9 → 52
      Potyvirid-P3; Protein P3 of Potyviral polyprotein

    11. NP_734338.1 NIb protein

      UniProtKB/TrEMBL
      Q56H34
      Conserved Domains (1) summary
      cl02808
      Location:23 → 485
      RT_like; RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P09814.2

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