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    LOC4347604 uncharacterized LOC4347604 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347604, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4347604
    Gene description
    uncharacterized LOC4347604
    Locus tag
    OSNPB_090520100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0669G04.6
    Expression
    Ubiquitous expression in mature seeds (RPKM 43.1), flower buds (RPKM 21.5) and 6 other tissues See more
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    Genomic context

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    See LOC4347604 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (24733699..24735845, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (20313567..20315721, complement)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene transcription factor MYC2 Neighboring gene uncharacterized LOC4347603 Neighboring gene probable 1-acylglycerol-3-phosphate O-acyltransferase Neighboring gene pentatricopeptide repeat-containing protein At2g36980, mitochondrial

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-directed DNA polymerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA synthesis involved in DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in DNA-templated DNA replication IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of delta DNA polymerase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized LOC4347604
    Names
    OSJNOa178M01.8
    Os09g0520100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422848.1 → NP_001409777.1  uncharacterized LOC4347604

      Status: VALIDATED

      Source sequence(s)
      AK119678, AK120041
      UniProtKB/TrEMBL
      A0A0P0XPH3, A2Z370, A3C0Q3, Q64MB0

    2. NM_001422849.1 → NP_001409778.1  uncharacterized LOC4347604

      Status: VALIDATED

      Source sequence(s)
      AK119678, AK120041, CV724421
      UniProtKB/TrEMBL
      A0A0P0XPH3, A2Z370, A3C0Q3, Q64MB0

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      24733699..24735845 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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