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    DDX39B DExD-box helicase 39B [ Microcebus murinus (gray mouse lemur) ]

    Gene ID: 105858134, updated on 13-Mar-2024

    Summary

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    Gene symbol
    DDX39B
    Gene description
    DExD-box helicase 39B
    See related
    Ensembl:ENSMICG00000017349
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Microcebus murinus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lemuriformes; Cheirogaleidae; Microcebus
    Also known as
    BAT1
    Orthologs
    human mouse all
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    Genomic context

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    See DDX39B in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    101 current Mmur_3.0 (GCF_000165445.2) 6 NC_033665.1 (1420102..1433530, complement)
    100 previous assembly Mmur_2.0 (GCF_000165445.1) Unplaced Scaffold NW_012199997.1 (703096..716524)

    Chromosome 6 - NC_033665.1Genomic Context describing neighboring genes Neighboring gene thioredoxin reductase 1, cytoplasmic pseudogene Neighboring gene uncharacterized LOC109730768 Neighboring gene mitochondrial coiled-coil domain 1 Neighboring gene ATPase H+ transporting V1 subunit G2 Neighboring gene NFKB inhibitor like 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA export from nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    spliceosome RNA helicase DDX39B
    Names
    DEAD-box helicase 39B
    HLA-B associated transcript 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Microcebus murinus Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmur_3.0 Primary Assembly

    Genomic

    1. NC_033665.1 Reference Mmur_3.0 Primary Assembly

      Range
      1420102..1433530 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012741053.1 → XP_012596507.1  spliceosome RNA helicase DDX39B

      See identical proteins and their annotated locations for XP_012596507.1

      UniProtKB/TrEMBL
      D0VXS6
      Conserved Domains (2) summary
      cd18787
      Location:262 → 391
      SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
      cd17950
      Location:44 → 251
      DEADc_DDX39; DEAD-box helicase domain of DEAD box protein 39

    2. XM_012741052.1 → XP_012596506.1  spliceosome RNA helicase DDX39B

      See identical proteins and their annotated locations for XP_012596506.1

      UniProtKB/TrEMBL
      D0VXS6
      Related
      ENSMICP00000015802.1, ENSMICT00000017347.3
      Conserved Domains (2) summary
      cd18787
      Location:262 → 391
      SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
      cd17950
      Location:44 → 251
      DEADc_DDX39; DEAD-box helicase domain of DEAD box protein 39
    Nucleotide Protein
    Heading Accession and Version

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