U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    LOC4344322 leucine-rich repeat extensin-like protein 5 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344322, updated on 1-Aug-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4344322
    Gene description
    leucine-rich repeat extensin-like protein 5
    Locus tag
    OSNPB_070684400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 8.4), leaves after flowering (RPKM 6.6) and 5 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4344322 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (29258047..29261513)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (29024572..29029432)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene ricin B-like lectin R40G3 Neighboring gene thioredoxin-like 1-1, chloroplastic Neighboring gene uncharacterized LOC9266496 Neighboring gene uncharacterized LOC9267143 Neighboring gene NAC domain-containing protein 87 Neighboring gene WUSCHEL-related homeobox 11-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    General protein information

    Go to the top of the page Help
    Preferred Names
    leucine-rich repeat extensin-like protein 5
    Names
    Os07g0684400

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      29258047..29261513
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791428.3 → XP_015646914.1  leucine-rich repeat extensin-like protein 5

      UniProtKB/TrEMBL
      A0A0P0XAB4, Q0D3I9
      Conserved Domains (1) summary
      PHA03247
      Location:16 → 170
      PHA03247; large tegument protein UL36; Provisional

    2. XM_015791430.3 → XP_015646916.1  leucine-rich repeat extensin-like protein 5

      UniProtKB/TrEMBL
      A0A0P0XAB4, Q0D3I9
      Conserved Domains (1) summary
      PHA03247
      Location:16 → 170
      PHA03247; large tegument protein UL36; Provisional

    3. XM_066312059.1 → XP_066168156.1  leucine-rich repeat extensin-like protein 5

      UniProtKB/TrEMBL
      A0A0P0XAB4, Q0D3I9

    4. XM_066312064.1 → XP_066168161.1  leucine-rich repeat extensin-like protein 5

      UniProtKB/TrEMBL
      A0A0P0XAB4, Q0D3I9

    5. XM_066312058.1 → XP_066168155.1  leucine-rich repeat extensin-like protein 5

      UniProtKB/TrEMBL
      A0A0P0XAB4, Q0D3I9

    6. XM_066312066.1 → XP_066168163.1  leucine-rich repeat extensin-like protein 5

      UniProtKB/TrEMBL
      A0A0P0XAB4, Q0D3I9

    7. XM_066312067.1 → XP_066168164.1  leucine-rich repeat extensin-like protein 5

      UniProtKB/TrEMBL
      A0A0P0XAB4, Q0D3I9

    8. XM_066312061.1 → XP_066168158.1  leucine-rich repeat extensin-like protein 5

      UniProtKB/TrEMBL
      A0A0P0XAB4, Q0D3I9

    9. XM_066312057.1 → XP_066168154.1  leucine-rich repeat extensin-like protein 5

      UniProtKB/TrEMBL
      A0A0P0XAB4, Q0D3I9

    10. XM_026026698.2 → XP_025882483.1  leucine-rich repeat extensin-like protein 5

      UniProtKB/TrEMBL
      A0A0P0XAB4, Q0D3I9

    11. XM_066312062.1 → XP_066168159.1  leucine-rich repeat extensin-like protein 5

      UniProtKB/TrEMBL
      A0A0P0XAB4, Q0D3I9

    12. XM_066312065.1 → XP_066168162.1  leucine-rich repeat extensin-like protein 5

      UniProtKB/TrEMBL
      A0A0P0XAB4, Q0D3I9

    13. XM_066312068.1 → XP_066168165.1  leucine-rich repeat extensin-like protein 5

      UniProtKB/TrEMBL
      A0A0P0XAB4, Q0D3I9

    14. XM_066312060.1 → XP_066168157.1  leucine-rich repeat extensin-like protein 5

      UniProtKB/TrEMBL
      A0A0P0XAB4, Q0D3I9

    15. XM_066312063.1 → XP_066168160.1  leucine-rich repeat extensin-like protein 5

      UniProtKB/TrEMBL
      A0A0P0XAB4, Q0D3I9

    16. XM_066312069.1 → XP_066168166.1  leucine-rich repeat extensin-like protein 5

      UniProtKB/TrEMBL
      A0A0P0XAB4, Q0D3I9

    17. XM_066312070.1 → XP_066168167.1  leucine-rich repeat extensin-like protein 5

      UniProtKB/TrEMBL
      A0A0P0XAB4, Q0D3I9

    18. XM_066312071.1 → XP_066168168.1  leucine-rich repeat extensin-like protein 5

      UniProtKB/TrEMBL
      A0A0P0XAB4, Q0D3I9

    19. XM_066312072.1 → XP_066168169.1  leucine-rich repeat extensin-like protein 5

      UniProtKB/TrEMBL
      A0A0P0XAB4, Q0D3I9

    20. XM_066312073.1 → XP_066168170.1  leucine-rich repeat extensin-like protein 5

      UniProtKB/TrEMBL
      A0A0P0XAB4, Q0D3I9
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials