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    LOC4346779 probable kinase CHARK [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346779, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4346779
    Gene description
    probable kinase CHARK
    Locus tag
    OSNPB_090339000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1104_G11.7
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    Genomic context

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    See LOC4346779 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (14698566..14701581)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (10365025..10368100)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene transfer RNA aspartic acid (anticodon GUC) Neighboring gene transfer RNA aspartic acid (anticodon GUC) Neighboring gene uncharacterized LOC4346780 Neighboring gene wall-associated receptor kinase 2-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable kinase CHARK
    Names
    Os09g0339000
    receptor kinase Lecrk-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      14698566..14701581
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015755358.3 → XP_015610844.1  probable kinase CHARK isoform X1

      UniProtKB/TrEMBL
      A3BXP5, Q0J2I5, Q6ESN7
      Conserved Domains (2) summary
      smart00220
      Location:177 → 380
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      cl21453
      Location:179 → 446
      PKc_like; Protein Kinases, catalytic domain

    2. XM_066304030.1 → XP_066160127.1  probable kinase CHARK isoform X2

    Nucleotide Protein
    Heading Accession and Version

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