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    Ankar ankyrin and armadillo repeat containing [ Rattus norvegicus (Norway rat) ]

    Gene ID: 501138, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Ankarprovided by RGD
    Official Full Name
    ankyrin and armadillo repeat containingprovided by RGD
    Primary source
    RGD:1561071
    See related
    EnsemblRapid:ENSRNOG00000003991 AllianceGenome:RGD:1561071
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1561071
    Summary
    Orthologous to human ANKAR (ankyrin and armadillo repeat containing). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Testes (RPKM 192.1), Heart (RPKM 18.9) and 3 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Ankar in Genome Data Viewer
    Location:
    9q22
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (55633681..55709721)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (48141534..48215400)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (53011561..53086178)

    Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 40 member 1 Neighboring gene proteolipid protein 2 like 1 Neighboring gene ASNSD1 upstream open reading frame Neighboring gene asparagine synthetase domain containing 1 Neighboring gene O-sialoglycoprotein endopeptidase-like 1 Neighboring gene PMS1 homolog 1, mismatch repair system component Neighboring gene ORMDL sphingolipid biosynthesis regulator 1 Neighboring gene large ribosomal subunit protein eL37-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    ankyrin and armadillo repeat containing; ankyrin and armadillo repeat-containing protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001431342.1 → NP_001418271.1  ankyrin and armadillo repeat containing isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000009
      UniProtKB/TrEMBL
      F1LUI7

    2. NM_001431343.1 → NP_001418272.1  ankyrin and armadillo repeat containing isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000009
      UniProtKB/TrEMBL
      F1LUI7

    3. NM_001431344.1 → NP_001418273.1  ankyrin and armadillo repeat containing isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000009
      UniProtKB/TrEMBL
      F1LUI7

    4. NM_001431345.1 → NP_001418274.1  ankyrin and armadillo repeat containing isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000009
      UniProtKB/TrEMBL
      F1LUI7

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086027.1 Reference GRCr8

      Range
      55633681..55709721
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039084559.2 → XP_038940487.1  ankyrin and armadillo repeat-containing protein isoform X1

      Conserved Domains (5) summary
      PHA02874
      Location:521 → 648
      PHA02874; ankyrin repeat protein; Provisional
      PLN03200
      Location:717 → 1130
      PLN03200; cellulose synthase-interactive protein; Provisional
      sd00045
      Location:614 → 648
      ANK; ANK repeat [structural motif]
      sd00043
      Location:750 → 781
      ARM; armadillo repeat [structural motif]
      pfam12796
      Location:586 → 681
      Ank_2; Ankyrin repeats (3 copies)

    2. XM_039084557.2 → XP_038940485.1  ankyrin and armadillo repeat-containing protein isoform X1

      Conserved Domains (5) summary
      PHA02874
      Location:521 → 648
      PHA02874; ankyrin repeat protein; Provisional
      PLN03200
      Location:717 → 1130
      PLN03200; cellulose synthase-interactive protein; Provisional
      sd00045
      Location:614 → 648
      ANK; ANK repeat [structural motif]
      sd00043
      Location:750 → 781
      ARM; armadillo repeat [structural motif]
      pfam12796
      Location:586 → 681
      Ank_2; Ankyrin repeats (3 copies)

    3. XM_063268120.1 → XP_063124190.1  ankyrin and armadillo repeat-containing protein isoform X2

      UniProtKB/TrEMBL
      A6INU2
      Related
      ENSRNOP00000005314.8, ENSRNOT00000005313.9

    4. XM_039084558.2 → XP_038940486.1  ankyrin and armadillo repeat-containing protein isoform X1

      Conserved Domains (5) summary
      PHA02874
      Location:521 → 648
      PHA02874; ankyrin repeat protein; Provisional
      PLN03200
      Location:717 → 1130
      PLN03200; cellulose synthase-interactive protein; Provisional
      sd00045
      Location:614 → 648
      ANK; ANK repeat [structural motif]
      sd00043
      Location:750 → 781
      ARM; armadillo repeat [structural motif]
      pfam12796
      Location:586 → 681
      Ank_2; Ankyrin repeats (3 copies)

    RNA

    1. XR_005489135.2 RNA Sequence

    2. XR_005489134.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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