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    pbxip1a pre-B-cell leukemia homeobox interacting protein 1a [ Danio rerio (zebrafish) ]

    Gene ID: 563463, updated on 2-Nov-2024

    Summary

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    Official Symbol
    pbxip1aprovided by ZNC
    Official Full Name
    pre-B-cell leukemia homeobox interacting protein 1aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-060503-871
    See related
    Ensembl:ENSDARG00000071015 AllianceGenome:ZFIN:ZDB-GENE-060503-871
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    id:ibd5036; si:ch211-210h11.11
    Summary
    Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be active in nucleus. Is expressed in mesoderm and somite. Orthologous to human PBXIP1 (PBX homeobox interacting protein 1). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    all
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    Genomic context

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    See pbxip1a in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (7549840..7567236)
    105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (7630648..7648308)

    Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein L9 Neighboring gene uncharacterized LOC137488468 Neighboring gene limb and CNS expressed 1 like Neighboring gene S100 calcium binding protein A11 Neighboring gene S100 calcium binding protein U

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. A gene expression screen in zebrafish embryogenesis. Kudoh T, et al. Genome Res, 2001 Dec. PMID 11731487
    2. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
    3. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
    4. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    5. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    pre-B-cell leukemia transcription factor interacting protein 1-like; pre-B-cell leukemia transcription factor-interacting protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007130.7 Reference GRCz11 Primary Assembly

      Range
      7549840..7567236
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005159476.5 → XP_005159533.1  pre-B-cell leukemia transcription factor-interacting protein 1 isoform X1

      See identical proteins and their annotated locations for XP_005159533.1

      UniProtKB/TrEMBL
      A0A8M2B630
      Conserved Domains (2) summary
      pfam15960
      Location:433 → 561
      DUF4763; Domain of unknown function (DUF4763)
      cl11531
      Location:387 → 463
      DUF904; Protein of unknown function (DUF904)

    2. XM_686823.10 → XP_691915.5  pre-B-cell leukemia transcription factor-interacting protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A8N7UVA5
      Related
      ENSDARP00000115416.1, ENSDART00000138866.3
      Conserved Domains (2) summary
      pfam15960
      Location:425 → 553
      DUF4763; Domain of unknown function (DUF4763)
      cl11531
      Location:379 → 455
      DUF904; Protein of unknown function (DUF904)

    3. XM_005159477.5 → XP_005159534.1  pre-B-cell leukemia transcription factor-interacting protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8M2B628, F1RDW1
      Related
      ENSDARP00000099035.2, ENSDART00000115058.4
      Conserved Domains (2) summary
      pfam15960
      Location:427 → 555
      DUF4763; Domain of unknown function (DUF4763)
      cl11531
      Location:381 → 457
      DUF904; Protein of unknown function (DUF904)

    4. XM_068215234.1 → XP_068071335.1  pre-B-cell leukemia transcription factor-interacting protein 1 isoform X4

    Nucleotide Protein Strain
    Heading Accession and Version

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