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    LOC9322801 E3 ubiquitin-protein ligase ORTHRUS 2 [ Arabidopsis lyrata subsp. lyrata ]

    Gene ID: 9322801, updated on 11-Apr-2024

    Summary

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    Gene symbol
    LOC9322801
    Gene description
    E3 ubiquitin-protein ligase ORTHRUS 2
    Locus tag
    ARALYDRAFT_315436
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    See LOC9322801 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302554.1 (4978729..4983564)

    NW_003302554.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9322799 Neighboring gene B3 domain-containing protein At1g08985 Neighboring gene uncharacterized LOC9322802 Neighboring gene protein PHLOEM PROTEIN 2-LIKE A8

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003302554 Unplaced Scaffold Reference v.1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of gene expression via chromosomal CpG island methylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase ORTHRUS 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference v.1.0 Primary Assembly

    Genomic

    1. NW_003302554.1 Reference v.1.0 Primary Assembly

      Range
      4978729..4983564
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002886689.2 → XP_002886735.1  E3 ubiquitin-protein ligase ORTHRUS 2

      See identical proteins and their annotated locations for XP_002886735.1

      UniProtKB/TrEMBL
      D7KYM7
      Conserved Domains (3) summary
      smart00249
      Location:14 → 60
      PHD; PHD zinc finger
      cd00162
      Location:142 → 185
      RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
      pfam02182
      Location:259 → 421
      SAD_SRA; SAD/SRA domain

    RNA

    1. XR_002334202.1 RNA Sequence

    2. XR_002334200.1 RNA Sequence

    3. XR_002334201.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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