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    pnn.S pinin, desmosome associated protein S homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 394335, updated on 3-Jul-2024

    Summary

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    Official Symbol
    pnn.S
    Official Full Name
    pinin, desmosome associated protein S homeolog
    Primary source
    Xenbase:XB-GENE-6254451
    Locus tag
    XELAEV_18041100mg
    See related
    EnsemblRapid:ENSXLAG00005028039
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    drs; pnn; drsp; mema; np-a; sdk3; pinin; pnn-a; pnn-b
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    Genomic context

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    See pnn.S in Genome Data Viewer
    Location:
    chromosome: 8S
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8S NC_054386.1 (5958516..5969026)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8S NC_030739.1 (5954865..5965360)

    Chromosome 8S - NC_054386.1Genomic Context describing neighboring genes Neighboring gene EH domain containing 4 S homeolog Neighboring gene trafficking protein particle complex subunit 6B S homeolog Neighboring gene lectin, galactoside-binding, soluble, 3 S homeolog Neighboring gene discs large homolog associated protein 5 S homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence that "pinin", reportedly a differentiation-specific desmosomal protein, is actually a widespread nuclear protein. Brandner JM, et al. Differentiation, 1997 Dec. PMID 9447706
    2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within RNA splicing IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within mRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in anchoring junction IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in desmosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nuclear speck IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    pinin, desmosome associated protein S homeolog
    Names
    nuclear protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001087556.1 → NP_001081025.1  pinin, desmosome associated protein S homeolog

      See identical proteins and their annotated locations for NP_001081025.1

      Status: PROVISIONAL

      Source sequence(s)
      Y10389
      UniProtKB/TrEMBL
      A0A974C2S4, A2VDA0, O73619
      Related
      ENSXLAP00005083381.1, ENSXLAT00005085019.1
      Conserved Domains (4) summary
      pfam04696
      Location:138 → 263
      Pinin_SDK_memA; pinin/SDK/memA/ protein conserved region
      pfam04697
      Location:5 → 134
      Pinin_SDK_N; pinin/SDK conserved region
      pfam15724
      Location:454 → 512
      TMEM119; TMEM119 family
      pfam15928
      Location:400 → 486
      DUF4746; Domain of unknown function (DUF4746)

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054386.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      5958516..5969026
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041574119.1 → XP_041430053.1  pinin, desmosome associated protein S homeolog isoform X1

      UniProtKB/TrEMBL
      A0A8J1LKE1, A2VDA0
      Related
      ENSXLAP00005083846.1, ENSXLAT00005085484.1
      Conserved Domains (3) summary
      TIGR00927
      Location:277 → 511
      2A1904; K+-dependent Na+/Ca+ exchanger
      pfam04696
      Location:138 → 263
      Pinin_SDK_memA; pinin/SDK/memA/ protein conserved region
      pfam04697
      Location:1 → 132
      Pinin_SDK_N; pinin/SDK conserved region
    Nucleotide Protein Strain
    Heading Accession and Version

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