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    YOKVgp1 polyprotein [ Yokose virus ]

    Gene ID: 1727359, updated on 15-Aug-2018

    Summary

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    Gene symbol
    YOKVgp1
    Gene description
    polyprotein
    Locus tag
    YOKVgp1
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Yokose virus (strain: Oita 36)
    Lineage
    Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus; Ntaya virus group
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    Genomic context

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    Sequence:
    NC_005039.1 (151..10428)

    NC_005039.1Genomic Context describing neighboring genes

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_005039.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic characterization of Yokose virus, a flavivirus isolated from the bat in Japan. Tajima S, et al. Virology, 2005 Feb 5. PMID 15661139

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    polyprotein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_005039.1 Reference assembly

      Range
      151..10428
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_872627.1 polyprotein [Yokose virus]

      See identical proteins and their annotated locations for NP_872627.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      Q7T918
      Conserved Domains (17) summary
      cd12149
      Location:597 → 685
      Flavi_E_C; Immunoglobulin-like domain III (C-terminal domain) of Flavivirus envelope glycoprotein E
      TIGR04240
      Location:690 → 786
      flavi_E_stem; flavivirus envelope glycoprotein E, stem/anchor domain
      smart00487
      Location:1689 → 1824
      DEXDc; DEAD-like helicases superfamily
      cd00079
      Location:1860 → 1962
      HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
      pfam01003
      Location:27 → 111
      Flavi_capsid; Flavivirus capsid protein C
      pfam00869
      Location:298 → 587
      Flavi_glycoprot; Flavivirus glycoprotein, central and dimerization domains
      pfam00948
      Location:788 → 1142
      Flavi_NS1; Flavivirus non-structural Protein NS1
      pfam00949
      Location:1518 → 1667
      Peptidase_S7; Peptidase S7, Flavivirus NS3 serine protease
      pfam00972
      Location:2772 → 3413
      Flavi_NS5; Flavivirus RNA-directed RNA polymerase
      pfam01002
      Location:1372 → 1496
      Flavi_NS2B; Flavivirus non-structural protein NS2B
      pfam01004
      Location:223 → 296
      Flavi_M; Flavivirus envelope glycoprotein M
      pfam01005
      Location:1151 → 1322
      Flavi_NS2A; Flavivirus non-structural protein NS2A
      pfam01349
      Location:2266 → 2512
      Flavi_NS4B; Flavivirus non-structural protein NS4B
      pfam01350
      Location:2121 → 2263
      Flavi_NS4A; Flavivirus non-structural protein NS4A
      pfam01570
      Location:147 → 220
      Flavi_propep; Flavivirus polyprotein propeptide
      pfam01728
      Location:2574 → 2746
      FtsJ; FtsJ-like methyltransferase
      pfam07652
      Location:1684 → 1829
      Flavi_DEAD; Flavivirus DEAD domain
    Nucleotide Protein
    Heading Accession and Version

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