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    UBB ubiquitin B [ Taeniopygia guttata (zebra finch) ]

    Gene ID: 100227218, updated on 13-Aug-2024

    Summary

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    Gene symbol
    UBB
    Gene description
    ubiquitin B
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Taeniopygia guttata
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia
    Also known as
    UBC
    Annotation information
    Annotation category: suggests misassembly
    Orthologs
    human mouse all
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    Genomic context

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    See UBB in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    106 current bTaeGut1.4.pri (GCF_003957565.2) 19 NC_044231.2 (3360107..3361514, complement)
    105 previous assembly bTaeGut2.pat.W.v2 (GCF_008822105.2) 19 NC_045017.1 (3244868..3247839, complement)

    Chromosome 19 - NC_044231.2Genomic Context describing neighboring genes Neighboring gene purinergic receptor P2X 5 Neighboring gene transient receptor potential cation channel subfamily V member 2 Neighboring gene histone H3 associated protein kinase Neighboring gene centromere protein V Neighboring gene phosphatidylinositol glycan anchor biosynthesis class L Neighboring gene uncharacterized LOC115497829

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein tag activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in modification-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    polyubiquitin-B
    Names
    ubiquitin C variant 14-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001245146.1 → NP_001232075.1  polyubiquitin-B isoform 4

      See identical proteins and their annotated locations for NP_001232075.1

      Status: PROVISIONAL

      Source sequence(s)
      DQ216240
      UniProtKB/TrEMBL
      B5G2N9, B5G2P3
      Conserved Domains (2) summary
      cd01803
      Location:77 → 152
      Ubiquitin; Ubiquitin
      smart00213
      Location:1 → 72
      UBQ; Ubiquitin homologues

    2. NM_001245830.1 → NP_001232759.1  polyubiquitin-B isoform 1

      See identical proteins and their annotated locations for NP_001232759.1

      Status: PROVISIONAL

      Source sequence(s)
      DQ216245
      UniProtKB/TrEMBL
      B5G2N7, B5G2N8, B5G2P0
      Conserved Domains (1) summary
      cd01803
      Location:77 → 152
      Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin

    3. NM_001245834.1 → NP_001232763.1  polyubiquitin-B isoform 3

      See identical proteins and their annotated locations for NP_001232763.1

      Status: PROVISIONAL

      Source sequence(s)
      DQ216250
      UniProtKB/TrEMBL
      B5G2N6, B5G2Q2
      Conserved Domains (2) summary
      cd01803
      Location:153 → 228
      Ubiquitin; Ubiquitin
      smart00213
      Location:1 → 72
      UBQ; Ubiquitin homologues

    4. NM_001245837.1 → NP_001232766.1  polyubiquitin-B isoform 1

      See identical proteins and their annotated locations for NP_001232766.1

      Status: PROVISIONAL

      Source sequence(s)
      DQ216253
      UniProtKB/TrEMBL
      B5G2N7, B5G2N8, B5G2P0
      Conserved Domains (1) summary
      cd01803
      Location:77 → 152
      Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin

    5. NM_001309424.1 → NP_001296353.1  polyubiquitin-B isoform 2

      See identical proteins and their annotated locations for NP_001296353.1

      Status: PROVISIONAL

      Source sequence(s)
      DQ216252
      UniProtKB/TrEMBL
      A0A674H514, B5G2Q4
      Conserved Domains (2) summary
      cd01803
      Location:153 → 228
      Ubiquitin; Ubiquitin
      smart00213
      Location:1 → 72
      UBQ; Ubiquitin homologues

    RefSeqs of Annotated Genomes: Taeniopygia guttata Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bTaeGut1.4.pri Primary Assembly

    Genomic

    1. NC_044231.2 Reference bTaeGut1.4.pri Primary Assembly

      Range
      3360107..3361514 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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