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    RPS24 ribosomal protein S24 [ Canis lupus familiaris (dog) ]

    Gene ID: 485132, updated on 5-Mar-2024

    Summary

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    Gene symbol
    RPS24
    Gene description
    ribosomal protein S24
    See related
    Ensembl:ENSCAFG00845014074
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See RPS24 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 4 NC_051808.1 (28188386..28194662)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 4 NC_006586.4 (28011882..28018156)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 4 NC_049225.1 (28615187..28621464)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 4 NC_049264.1 (28063264..28069528)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 4 NC_049745.1 (28262106..28268381)

    Chromosome 4 - NC_051808.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102154841 Neighboring gene RNA polymerase III subunit A Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC111095507 Neighboring gene U6 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Development and characterization of a normalized canine retinal cDNA library for genomic and expression studies. Zangerl B, et al. Invest Ophthalmol Vis Sci, 2006 Jun. PMID 16723480

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    small ribosomal subunit protein eS24; 40S ribosomal protein S24

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001252317.1 → NP_001239246.1  small ribosomal subunit protein eS24 isoform 1

      See identical proteins and their annotated locations for NP_001239246.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the shortest isoform (1).
      Source sequence(s)
      DN270012, DN324017, DN338200, GR891075
      UniProtKB/TrEMBL
      A0A8C0KWR7, A0A8C0L1H1, A0A8C0NZY1, A0A8C0TRJ0, H9GWG6
      Conserved Domains (1) summary
      PTZ00071
      Location:1 → 130
      PTZ00071; 40S ribosomal protein S24; Provisional

    2. NM_001252318.1 → NP_001239247.1  small ribosomal subunit protein eS24 isoform 2

      See identical proteins and their annotated locations for NP_001239247.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) has multiple differences in the 3' coding region, compared to variant 1, and encodes an isoform (2) with a longer C-terminus, compared to isoform 1.
      Source sequence(s)
      DN270012, DN324017, DN338200, GR895069
      UniProtKB/TrEMBL
      A0A8C0L1H1, A0A8C0NZY1, A0A8C0TVV8, A0A8I3NSJ8
      Related
      ENSCAFP00845019955.1, ENSCAFT00845025355.1
      Conserved Domains (1) summary
      PTZ00071
      Location:1 → 130
      PTZ00071; 40S ribosomal protein S24; Provisional

    3. NM_001252319.1 → NP_001239248.1  small ribosomal subunit protein eS24 isoform 3

      See identical proteins and their annotated locations for NP_001239248.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) has an additional frame-shifting exon in the 3' coding region, compared to variant 1, and encodes an isoform (3) with a longer C-terminus, compared to isoform 1. Variants 3 and 6 encode the same protein.
      Source sequence(s)
      DN270012, DN324017, DN338200, GR889232
      UniProtKB/TrEMBL
      A0A8C0L1H1, A0A8C0NZY1, A0A8C0Z6H5, E2QWF8, J9NRJ3, L7N0B1
      Related
      ENSCAFP00845019965.1, ENSCAFT00845025368.1
      Conserved Domains (1) summary
      PTZ00071
      Location:1 → 130
      PTZ00071; 40S ribosomal protein S24; Provisional

    4. NM_001252320.1 → NP_001239249.1  small ribosomal subunit protein eS24 isoform 4

      See identical proteins and their annotated locations for NP_001239249.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) lacks a frame-shifting exon in the 3' coding region, compared to variant 1, and encodes an isoform (4) with a longer C-terminus, compared to isoform 1.
      Source sequence(s)
      CO664318, DN270012, DN324017, DN338200
      UniProtKB/TrEMBL
      A0A8C0L1H1, A0A8C0NZY1, A0A8C0TW16
      Related
      ENSCAFP00845019922.1, ENSCAFT00845025315.1
      Conserved Domains (1) summary
      PTZ00071
      Location:1 → 130
      PTZ00071; 40S ribosomal protein S24; Provisional

    5. NM_001252321.1 → NP_001239250.1  small ribosomal subunit protein eS24 isoform 5

      See identical proteins and their annotated locations for NP_001239250.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (5) has multiple differences in the 3' coding region, compared to variant 1, and encodes an isoform (5) with a longer C-terminus, compared to isoform 1.
      Source sequence(s)
      DN270012, DN270681, DN324017, DN338200
      UniProtKB/TrEMBL
      A0A8C0L1H1, A0A8C0NZY1, A0A8C0TTU5, A0A8I3S0M2
      Related
      ENSCAFP00845019893.1, ENSCAFT00845025285.1
      Conserved Domains (1) summary
      PTZ00071
      Location:1 → 130
      PTZ00071; 40S ribosomal protein S24; Provisional

    6. NM_001252322.1 → NP_001239251.1  small ribosomal subunit protein eS24 isoform 3

      See identical proteins and their annotated locations for NP_001239251.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (6) has an additional frame-shifting exon in the 3' coding region, compared to variant 1, and encodes an isoform (3) with a longer C-terminus, compared to isoform 1. Variants 3 and 6 encode the same protein.
      Source sequence(s)
      DN270012, DN338200, DT539859, GR889129
      UniProtKB/TrEMBL
      A0A8C0L1H1, A0A8C0NZY1, A0A8C0Z6H5, E2QWF8, J9NRJ3, L7N0B1
      Related
      ENSCAFP00845019947.1, ENSCAFT00845025344.1
      Conserved Domains (1) summary
      PTZ00071
      Location:1 → 130
      PTZ00071; 40S ribosomal protein S24; Provisional

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051808.1 Reference ROS_Cfam_1.0

      Range
      28188386..28194662
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038662295.1 → XP_038518223.1  40S ribosomal protein S24 isoform X1

      UniProtKB/TrEMBL
      A0A8C0KQ20
      Conserved Domains (1) summary
      cl00878
      Location:1 → 118
      Ribosomal_S24e; Ribosomal protein S24e

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049264.1 Alternate UMICH_Zoey_3.1

      Range
      28063264..28069528
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049745.1 Alternate UNSW_CanFamBas_1.0

      Range
      28262106..28268381
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049225.1 Alternate UU_Cfam_GSD_1.0

      Range
      28615187..28621464
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006586.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      28011882..28018156
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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