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    rag1 recombination activating 1 [ Erpetoichthys calabaricus (reedfish) ]

    Gene ID: 114643176, updated on 15-Mar-2024

    Summary

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    Gene symbol
    rag1
    Gene description
    recombination activating 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Erpetoichthys calabaricus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Polypteriformes; Polypteridae; Erpetoichthys
    Orthologs
    human zebrafish all
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    Genomic context

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    See rag1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2023_02 current fErpCal1.3 (GCF_900747795.2) 2 NC_041395.2 (9764144..9773992)
    100 previous assembly fErpCal1.1 (GCF_900747795.1) Unplaced Scaffold NW_021317219.1 (1646621..1671418)

    Chromosome 2 - NC_041395.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC127526863 Neighboring gene 14-3-3 protein gamma-B-like Neighboring gene recombination activating gene 2 Neighboring gene intraflagellar transport associated protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables double-stranded DNA endonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in V(D)J recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in adaptive immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in pre-B cell allelic exclusion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of DNA recombinase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of endodeoxyribonuclease complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    V(D)J recombination-activating protein 1
    Names
    recombinase activating protein 1
    recombination activating protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_900747795.2-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fErpCal1.3 Primary Assembly

    Genomic

    1. NC_041395.2 Reference fErpCal1.3 Primary Assembly

      Range
      9764144..9773992
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028791849.2 → XP_028647682.2  V(D)J recombination-activating protein 1

    Nucleotide Protein
    Heading Accession and Version

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