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    PenMV_gp1 polyprotein [ Pennisetum mosaic virus ]

    Gene ID: 5076000, updated on 18-Aug-2023

    Summary

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    Gene symbol
    PenMV_gp1
    Gene description
    polyprotein
    Locus tag
    PenMV_gp1
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Pennisetum mosaic virus (isolate: B)
    Lineage
    Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae; Potyvirus
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    Genomic context

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    Sequence:
    NC_007147.1 (173..9370)

    NC_007147.1Genomic Context describing neighboring genes Neighboring gene PIPO

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_007147.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    polyprotein
    Names
    P1 protein
    HC-Pro protein
    P3 protein
    6K1 protein
    CI protein
    6K2 protein
    NIa-VPg protein
    NIa-Pro protein
    NIb replicase
    coat protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_007147.1 Reference assembly

      Range
      173..9370
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_249455.1 polyprotein [Pennisetum mosaic virus]

      See identical proteins and their annotated locations for YP_249455.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A2T823, Q4VS22
      Conserved Domains (10) summary
      smart00487
      Location:1198 → 1347
      DEXDc; DEAD-like helicases superfamily
      cd00046
      Location:1202 → 1329
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam01577
      Location:8 → 234
      Peptidase_S30; Potyvirus P1 protease
      pfam00271
      Location:1373 → 1483
      Helicase_C; Helicase conserved C-terminal domain
      pfam00767
      Location:2830 → 3062
      Poty_coat; Potyvirus coat protein
      pfam00851
      Location:271 → 706
      Peptidase_C6; Helper component proteinase
      pfam00863
      Location:1999 → 2232
      Peptidase_C4; Peptidase family C4
      pfam08440
      Location:1508 → 1781
      Poty_PP; Potyviridae polyprotein
      pfam13608
      Location:720 → 1173
      Potyvirid-P3; Protein P3 of Potyviral polyprotein
      cl02808
      Location:2267 → 2711
      RT_like; RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, ...

    2. YP_006395339.1 P1 protein

      Conserved Domains (1) summary
      pfam01577
      Location:26 → 234
      Peptidase_S30; Potyvirus P1 protease

    3. YP_006395340.1 HC-Pro protein

      Conserved Domains (1) summary
      pfam00851
      Location:25 → 460
      Peptidase_C6; Helper component proteinase

    4. YP_006395341.1 P3 protein

      Conserved Domains (1) summary
      pfam13608
      Location:14 → 334
      Potyvirid-P3; Protein P3 of Potyviral polyprotein

    5. YP_006395342.1 6K1 protein

      Conserved Domains (1) summary
      pfam13608
      Location:8 → 55
      Potyvirid-P3; Protein P3 of Potyviral polyprotein

    6. YP_006395343.1 CI protein

      Conserved Domains (5) summary
      smart00487
      Location:78 → 227
      DEXDc; DEAD-like helicases superfamily
      cd00046
      Location:82 → 209
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam00271
      Location:253 → 363
      Helicase_C; Helicase conserved C-terminal domain
      pfam08440
      Location:388 → 638
      Poty_PP; Potyviridae polyprotein
      pfam13608
      Location:4 → 53
      Potyvirid-P3; Protein P3 of Potyviral polyprotein

    7. YP_006395344.1 6K2 protein

      Conserved Domains (1) summary
      pfam08440
      Location:3 → 23
      Poty_PP; Potyviridae polyprotein

    8. YP_006395345.1 NIa-VPg protein

    9. YP_006395346.1 NIa-Pro protein

      Conserved Domains (1) summary
      pfam00863
      Location:2 → 232
      Peptidase_C4; Peptidase family C4

    10. YP_006395347.1 NIb replicase

      Conserved Domains (1) summary
      cl02808
      Location:25 → 469
      RT_like; RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, ...

    11. YP_006395348.1 coat protein

      UniProtKB/TrEMBL
      Q5MXB6
      Conserved Domains (1) summary
      pfam00767
      Location:67 → 299
      Poty_coat; Potyvirus coat protein
    Nucleotide Protein
    Heading Accession and Version

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