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    EAPV_gp1 polyprotein [ East Asian Passiflora virus ]

    Gene ID: 5076677, updated on 18-Aug-2023

    Summary

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    Gene symbol
    EAPV_gp1
    Gene description
    polyprotein
    Locus tag
    EAPV_gp1
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    East Asian Passiflora virus (strain: AO, isolate: AO)
    Lineage
    Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae; Potyvirus
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    Genomic context

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    Sequence:
    NC_007728.1 (129..9791)

    NC_007728.1Genomic Context describing neighboring genes Neighboring gene PIPO

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_007728.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Complete nucleotide sequence of the genomic RNA of an Amami-O-shima strain of East Asian Passiflora potyvirus. Iwai H, et al. Arch Virol, 2006 Jul. PMID 16718357

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    polyprotein
    Names
    P1 protein
    HC-pro protein
    P3 protein
    6K1 protein
    CI proein
    6K2 protein
    NIa-VPg protein
    NIa-Pro protein
    NIb protein
    coat protein
    YP_459919.1
    • coding P1, HC, P3, 6K1, CI, 6K2, NIa-VPg, NIa-Pro, NIb and CP
      pre-cursor of mature proteins

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_007728.1 Reference assembly

      Range
      129..9791
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_459919.1 polyprotein [East Asian Passiflora virus]

      See identical proteins and their annotated locations for YP_459919.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A292G4Q5, I7GY31, I7HAU9, I7HD34, Q2MH09
      Conserved Domains (10) summary
      smart00487
      Location:1372 → 1512
      DEXDc; DEAD-like helicases superfamily
      cd00046
      Location:1372 → 1497
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam01577
      Location:198 → 435
      Peptidase_S30; Potyvirus P1 protease
      pfam00271
      Location:1541 → 1649
      Helicase_C; Helicase conserved C-terminal domain
      pfam00767
      Location:2986 → 3217
      Poty_coat; Potyvirus coat protein
      pfam00851
      Location:461 → 892
      Peptidase_C6; Helper component proteinase
      pfam00863
      Location:2168 → 2400
      Peptidase_C4; Peptidase family C4
      pfam08440
      Location:1676 → 1948
      Poty_PP; Potyviridae polyprotein
      pfam13608
      Location:905 → 1342
      Potyvirid-P3; Protein P3 of Potyviral polyprotein
      cl02808
      Location:2438 → 2899
      RT_like; RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, ...

    2. YP_006395352.1 P1 protein

      Conserved Domains (1) summary
      pfam01577
      Location:198 → 435
      Peptidase_S30; Potyvirus P1 protease

    3. YP_006395353.1 HC-pro protein

      Conserved Domains (1) summary
      pfam00851
      Location:26 → 457
      Peptidase_C6; Helper component proteinase

    4. YP_006395354.1 P3 protein

      Conserved Domains (1) summary
      pfam13608
      Location:13 → 273
      Potyvirid-P3; Protein P3 of Potyviral polyprotein

    5. YP_006395355.1 6K1 protein

      Conserved Domains (1) summary
      pfam13608
      Location:1 → 52
      Potyvirid-P3; Protein P3 of Potyviral polyprotein

    6. YP_006395356.1 CI proein

      Conserved Domains (5) summary
      smart00487
      Location:81 → 221
      DEXDc; DEAD-like helicases superfamily
      cd00046
      Location:81 → 206
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam00271
      Location:250 → 358
      Helicase_C; Helicase conserved C-terminal domain
      pfam08440
      Location:385 → 609
      Poty_PP; Potyviridae polyprotein
      pfam13608
      Location:1 → 51
      Potyvirid-P3; Protein P3 of Potyviral polyprotein

    7. YP_006395357.1 6K2 protein

      Conserved Domains (1) summary
      pfam08440
      Location:1 → 23
      Poty_PP; Potyviridae polyprotein

    8. YP_006395358.1 NIa-VPg protein

    9. YP_006395359.1 NIa-Pro protein

      Conserved Domains (1) summary
      pfam00863
      Location:1 → 232
      Peptidase_C4; Peptidase family C4

    10. YP_006395360.1 NIb protein

      Conserved Domains (1) summary
      cl02808
      Location:27 → 488
      RT_like; RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, ...

    11. YP_006395361.1 coat protein

      UniProtKB/TrEMBL
      I7GY28, I7GY29, I7H3T4, I7HAU4, I7HD32
      Conserved Domains (1) summary
      pfam00767
      Location:56 → 287
      Poty_coat; Potyvirus coat protein
    Nucleotide Protein
    Heading Accession and Version

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