U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    SPDVgp12 truncated polyprotein [ Salmon pancreas disease virus ]

    Gene ID: 13165427, updated on 18-Aug-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    SPDVgp12
    Gene description
    truncated polyprotein
    Locus tag
    SPDVgp12
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Salmon pancreas disease virus (isolate: F93125)
    Lineage
    Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Togaviridae; Alphavirus
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_003930.1 (7869..10522)

    NC_003930.1Genomic Context describing neighboring genes Neighboring gene non-structural polyprotein Neighboring gene Neighboring gene Neighboring gene structural polyprotein Neighboring gene Neighboring gene Neighboring gene Neighboring gene Neighboring gene

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003930.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Comparison of two aquatic alphaviruses, salmon pancreas disease virus and sleeping disease virus, by using genome sequence analysis, monoclonal reactivity, and cross-infection. Weston J, et al. J Virol, 2002 Jun. PMID 12021349, Free PMC Article
    2. Discovery of frameshifting in Alphavirus 6K resolves a 20-year enigma. Firth AE, et al. Virol J, 2008 Sep 26. PMID 18822126, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General protein information

    Go to the top of the page Help
    Preferred Names
    truncated polyprotein
    Names
    transframe fusion protein
    YP_006491239.1
    • Truncated version of structural polyprotein and transframe fusion protein have been added by NCBI Staff with the kind help of Dr. David Karlin (Department of Zoology, University of Oxford, UK) and Dr. Andrew Firth (Department of Pathology, University of Cambridge, UK).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003930.1 Reference assembly

      Range
      7869..10522
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_006491239.1 truncated polyprotein [Salmon pancreas disease virus]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8G1GLC0
      Conserved Domains (4) summary
      pfam00943
      Location:376 → 785
      Alpha_E2_glycop; Alphavirus E2 glycoprotein
      pfam00944
      Location:136 → 272
      Peptidase_S3; Alphavirus core protein
      pfam01563
      Location:296 → 353
      Alpha_E3_glycop; Alphavirus E3 glycoprotein
      pfam01589
      Location:787 → 838
      Alpha_E1_glycop; Alphavirus E1 glycoprotein

    2. YP_006491240.1 transframe fusion protein

      Conserved Domains (1) summary
      pfam01589
      Location:4 → 47
      Alpha_E1_glycop; Alphavirus E1 glycoprotein

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.